5YL5 | pdb_00005yl5

Crystal structure of dodecameric Dehydroquinate dehydratase from Acinetobacter baumannii at 1.9A resolution

PDB DOI: https://doi.org/10.2210/pdb5YL5/pdb

Classification: LYASE
Organism(s): Acinetobacter baumannii ATCC 17978
Expression System: Escherichia coli
Mutation(s): No

Deposited: 2017-10-17 Released: 2017-11-01
Deposition Author(s): Iqbal, N., Kaur, P., Sharma, S., Singh, T.P.

Experimental Data Snapshot

Method: X-RAY DIFFRACTION
Resolution: 1.90 Å
R-Value Free:
0.218 (Depositor), 0.220 (DCC)
R-Value Work:
0.181 (Depositor), 0.190 (DCC)
R-Value Observed:
0.182 (Depositor)

Starting Model: experimental
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wwPDB Validation 3D Report Full Report

This is version 1.1 of the entry. See complete history.

Literature

Crystal structure of dodecameric Dehydroquinate dehydratase from Acinetobacter baumannii at 1.9A resolution

Iqbal, N., Kaur, P., Sharma, S., Singh, T.P.

To be published.

Macromolecule Content

Total Structure Weight: 200.23 kDa
Atom Count: 14,153
Modeled Residue Count: 1,742
Deposited Residue Count: 1,812
Unique protein chains: 1

Macromolecules

Find similar proteins by:

(by identity cutoff) | 3D Structure

Entity ID: 1
Molecule	Chains	Sequence Length	Organism	Details	Image
3-dehydroquinate dehydratase	A, B, C, D, E A, B, C, D, E, F, G, H, I, J, K, L	151	Acinetobacter baumannii ATCC 17978	Mutation(s): 0 Gene Names: aroQ, A1S_2009 EC: 4.2.1.10
UniProt
Find proteins for A3M692 (Acinetobacter baumannii (strain ATCC 17978 / DSM 105126 / CIP 53.77 / LMG 1025 / NCDC KC755 / 5377)) Explore A3M692 Go to UniProtKB: A3M692
Entity Groups
Sequence Clusters	30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt Group	A3M692
Sequence Annotations Expand
Reference Sequence

Small Molecules

Ligands 3 Unique
ID	Chains	Name / Formula / InChI Key	2D Diagram	3D Interactions
TRS Query on TRS Download Ideal Coordinates CCD File SDF format, chain S [auth D] MOL2 format, chain S [auth D] mmCIF format, chain S [auth D]	S [auth D]	2-AMINO-2-HYDROXYMETHYL-PROPANE-1,3-DIOL C₄ H₁₂ N O₃ LENZDBCJOHFCAS-UHFFFAOYSA-O		Interactions Focus chain S [auth D] Interactions & Density Focus chain S [auth D]
SO4 Query on SO4 Download Ideal Coordinates CCD File SDF format, chain AA [auth H] SDF format, chain BA [auth H] SDF format, chain CA [auth I] SDF format, chain DA [auth I] SDF format, chain EA [auth J] SDF format, chain FA [auth K] SDF format, chain GA [auth L] SDF format, chain M [auth A] SDF format, chain N [auth A] SDF format, chain P [auth B] SDF format, chain Q [auth C] SDF format, chain R [auth D] SDF format, chain T [auth E] SDF format, chain U [auth E] SDF format, chain Y [auth F] SDF format, chain Z [auth G] MOL2 format, chain AA [auth H] MOL2 format, chain BA [auth H] MOL2 format, chain CA [auth I] MOL2 format, chain DA [auth I] MOL2 format, chain EA [auth J] MOL2 format, chain FA [auth K] MOL2 format, chain GA [auth L] MOL2 format, chain M [auth A] MOL2 format, chain N [auth A] MOL2 format, chain P [auth B] MOL2 format, chain Q [auth C] MOL2 format, chain R [auth D] MOL2 format, chain T [auth E] MOL2 format, chain U [auth E] MOL2 format, chain Y [auth F] MOL2 format, chain Z [auth G] mmCIF format, chain AA [auth H] mmCIF format, chain BA [auth H] mmCIF format, chain CA [auth I] mmCIF format, chain DA [auth I] mmCIF format, chain EA [auth J] mmCIF format, chain FA [auth K] mmCIF format, chain GA [auth L] mmCIF format, chain M [auth A] mmCIF format, chain N [auth A] mmCIF format, chain P [auth B] mmCIF format, chain Q [auth C] mmCIF format, chain R [auth D] mmCIF format, chain T [auth E] mmCIF format, chain U [auth E] mmCIF format, chain Y [auth F] mmCIF format, chain Z [auth G]	AA [auth H] BA [auth H] CA [auth I] DA [auth I] EA [auth J] AA [auth H], BA [auth H], CA [auth I], DA [auth I], EA [auth J], FA [auth K], GA [auth L], M [auth A], N [auth A], P [auth B], Q [auth C], R [auth D], T [auth E], U [auth E], Y [auth F], Z [auth G]	SULFATE ION O₄ S QAOWNCQODCNURD-UHFFFAOYSA-L		Interactions Focus chain AA [auth H] Focus chain BA [auth H] Focus chain CA [auth I] Focus chain DA [auth I] Focus chain EA [auth J] Focus chain FA [auth K] Focus chain GA [auth L] Focus chain M [auth A] Focus chain N [auth A] Focus chain P [auth B] Focus chain Q [auth C] Focus chain R [auth D] Focus chain T [auth E] Focus chain U [auth E] Focus chain Y [auth F] Focus chain Z [auth G] Interactions & Density Focus chain AA [auth H] Focus chain BA [auth H] Focus chain CA [auth I] Focus chain DA [auth I] Focus chain EA [auth J] Focus chain FA [auth K] Focus chain GA [auth L] Focus chain M [auth A] Focus chain N [auth A] Focus chain P [auth B] Focus chain Q [auth C] Focus chain R [auth D] Focus chain T [auth E] Focus chain U [auth E] Focus chain Y [auth F] Focus chain Z [auth G]
GOL Query on GOL Download Ideal Coordinates CCD File SDF format, chain O [auth A] SDF format, chain V [auth E] SDF format, chain W [auth E] SDF format, chain X [auth E] MOL2 format, chain O [auth A] MOL2 format, chain V [auth E] MOL2 format, chain W [auth E] MOL2 format, chain X [auth E] mmCIF format, chain O [auth A] mmCIF format, chain V [auth E] mmCIF format, chain W [auth E] mmCIF format, chain X [auth E]	O [auth A], V [auth E], W [auth E], X [auth E]	GLYCEROL C₃ H₈ O₃ PEDCQBHIVMGVHV-UHFFFAOYSA-N		Interactions Focus chain O [auth A] Focus chain V [auth E] Focus chain W [auth E] Focus chain X [auth E] Interactions & Density Focus chain O [auth A] Focus chain V [auth E] Focus chain W [auth E] Focus chain X [auth E]