6E6N | pdb_00006e6n

Pheromone from Euplotes raikovi, Er-13

PDB DOI: https://doi.org/10.2210/pdb6E6N/pdb

Classification: SIGNALING PROTEIN
Organism(s): Euplotes raikovi
Mutation(s): No

Deposited: 2018-07-25 Released: 2019-08-07
Deposition Author(s): Finke, A.D., Marsh, M.E.

Experimental Data Snapshot

Method: X-RAY DIFFRACTION
Resolution: 1.36 Å
R-Value Free:
0.180 (Depositor), 0.180 (DCC)
R-Value Work:
0.152 (Depositor), 0.160 (DCC)
R-Value Observed:
0.155 (Depositor)

wwPDB Validation 3D Report Full Report

This is version 1.1 of the entry. See complete history.

Literature

Ab initio crystal structure determination of Euplotes raikovi pheromones from high-resolution data

Finke, A.D., Pedrini, B., Alimenti, C., Vallesi, A., Luporini, P., Marsh, M.

To be published.

Macromolecule Content

Total Structure Weight: 4.06 kDa
Atom Count: 312
Modeled Residue Count: 38
Deposited Residue Count: 38
Unique protein chains: 1

Macromolecules

Find similar proteins by:

(by identity cutoff) | 3D Structure

Entity ID: 1
Molecule	Chains	Sequence Length	Organism	Details	Image
Pheromone from Euplotes raikovi Er-13	A	38	Euplotes raikovi	Mutation(s): 0
UniProt
Find proteins for A0A482LMF4 (Euplotes raikovi) Explore A0A482LMF4 Go to UniProtKB: A0A482LMF4
Entity Groups
Sequence Clusters	30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt Group	A0A482LMF4
Sequence Annotations Expand
Reference Sequence

Experimental Data & Validation

Experimental Data

Method: X-RAY DIFFRACTION
Resolution: 1.36 Å
R-Value Free: 0.180 (Depositor), 0.180 (DCC)
R-Value Work: 0.152 (Depositor), 0.160 (DCC)
R-Value Observed: 0.155 (Depositor)

Space Group: P 4₃

Unit Cell:

Length ( Å )	Angle ( ˚ )
a = 39.116	α = 90
b = 39.116	β = 90
c = 19.446	γ = 90

Software Package:

Software Name	Purpose
REFMAC	refinement
XDS	data reduction
XDS	data scaling
Arcimboldo	phasing

Structure Validation

View Full Validation Report

Entry History

Deposition Data

Released Date: 2019-08-07

Deposition Author(s):

Revision History (Full details and data files)

Version 1.0: 2019-08-07
Type: Initial release
Version 1.1: 2024-10-23
Changes: Data collection, Database references, Structure summary

RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729.