7EOE | pdb_00007eoe

Crystal structure of CCDC25 homodimer

PDB DOI: https://doi.org/10.2210/pdb7EOE/pdb

Classification: DNA BINDING PROTEIN
Organism(s): Homo sapiens
Expression System: Escherichia coli
Mutation(s): No

Deposited: 2021-04-22 Released: 2022-11-02
Deposition Author(s): Liu, Y.R.

Experimental Data Snapshot

Method: X-RAY DIFFRACTION
Resolution: 2.90 Å
R-Value Free:
0.287 (Depositor), 0.290 (DCC)
R-Value Work:
0.251 (Depositor), 0.250 (DCC)
R-Value Observed:
0.253 (Depositor)

Starting Model: in silico
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wwPDB Validation 3D Report Full Report

This is version 1.1 of the entry. See complete history.

Literature

Crystal structure of CCDC25 homodimer

Liu, Y.R.

To be published.

Macromolecule Content

Total Structure Weight: 45.46 kDa
Atom Count: 2,858
Modeled Residue Count: 347
Deposited Residue Count: 386
Unique protein chains: 1

Macromolecules

Find similar proteins by:

(by identity cutoff) | 3D Structure

Entity ID: 1
Molecule	Chains	Sequence Length	Organism	Details	Image
Coiled-coil domain-containing protein 25	A, B	193	Homo sapiens	Mutation(s): 0 Gene Names: CCDC25
UniProt & NIH Common Fund Data Resources
Find proteins for Q86WR0 (Homo sapiens) Explore Q86WR0 Go to UniProtKB: Q86WR0
PHAROS: Q86WR0 GTEx: ENSG00000147419
Entity Groups
Sequence Clusters	30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt Group	Q86WR0
Sequence Annotations Expand
Reference Sequence

Experimental Data & Validation

Experimental Data

Method: X-RAY DIFFRACTION
Resolution: 2.90 Å
R-Value Free: 0.287 (Depositor), 0.290 (DCC)
R-Value Work: 0.251 (Depositor), 0.250 (DCC)
R-Value Observed: 0.253 (Depositor)

Space Group: C 1 2 1

Unit Cell:

Length ( Å )	Angle ( ˚ )
a = 124.192	α = 90
b = 47.73	β = 118.84
c = 83.024	γ = 90

Software Package:

Software Name	Purpose
SCALA	data scaling
PHENIX	refinement
PDB_EXTRACT	data extraction
HKL-3000	data reduction
PHASER	phasing

Structure Validation

View Full Validation Report

Entry History

Deposition Data

Released Date: 2022-11-02

Deposition Author(s):

Revision History (Full details and data files)

Version 1.0: 2022-11-02
Type: Initial release
Version 1.1: 2024-04-03
Changes: Data collection, Refinement description

RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729.