7JUM | pdb_00007jum

Pfs230 D1 domain in complex with neutralizing antibody LMIV230-01


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.00 Å
  • R-Value Free: 
    0.233 (Depositor), 0.240 (DCC) 
  • R-Value Work: 
    0.191 (Depositor), 0.200 (DCC) 

wwPDB Validation   3D Report Full Report


This is version 1.2 of the entry. See complete history


Literature

A human monoclonal antibody blocks malaria transmission and defines a highly conserved neutralizing epitope on gametes.

Coelho, C.H.Tang, W.K.Burkhardt, M.Galson, J.D.Muratova, O.Salinas, N.D.Alves E Silva, T.L.Reiter, K.MacDonald, N.J.Nguyen, V.Herrera, R.Shimp, R.Narum, D.L.Byrne-Steele, M.Pan, W.Hou, X.Brown, B.Eisenhower, M.Han, J.Jenkins, B.J.Doritchamou, J.Y.A.Smelkinson, M.G.Vega-Rodriguez, J.Truck, J.Taylor, J.J.Sagara, I.Renn, J.P.Tolia, N.H.Duffy, P.E.

(2021) Nat Commun 12: 1750-1750

  • DOI: https://doi.org/10.1038/s41467-021-21955-1
  • Primary Citation of Related Structures:  
    7JUM

  • PubMed Abstract: 

    Malaria elimination requires tools that interrupt parasite transmission. Here, we characterize B cell receptor responses among Malian adults vaccinated against the first domain of the cysteine-rich 230 kDa gamete surface protein Pfs230, a key protein in sexual stage development of P. falciparum parasites. Among nine Pfs230 human monoclonal antibodies (mAbs) that we generated, one potently blocks transmission to mosquitoes in a complement-dependent manner and reacts to the gamete surface; the other eight show only low or no blocking activity. The structure of the transmission-blocking mAb in complex with vaccine antigen reveals a large discontinuous conformational epitope, specific to domain 1 of Pfs230 and comprising six structural elements in the protein. The epitope is conserved, suggesting the transmission-blocking mAb is broadly functional. This study provides a rational basis to improve malaria vaccines and develop therapeutic antibodies for malaria elimination.


  • Organizational Affiliation
    • Pathogenesis and Immunity Section, Laboratory of Malaria Immunology and Vaccinology, National Institute of Allergy and Infectious Diseases, National Institutes of Health, Bethesda, MD, USA.

Macromolecules
Find similar proteins by:  (by identity cutoff)  |  3D Structure
Entity ID: 1
MoleculeChains Sequence LengthOrganismDetailsImage
Gametocyte surface protein P230
A, B, C
195Plasmodium falciparum 3D7Mutation(s): 0 
Gene Names: PFS230PF230S230
UniProt
Find proteins for P68874 (Plasmodium falciparum (isolate 3D7))
Explore P68874 
Go to UniProtKB:  P68874
Entity Groups  
Sequence Clusters30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt GroupP68874
Sequence Annotations
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  • Reference Sequence
Find similar proteins by:  (by identity cutoff)  |  3D Structure
Entity ID: 2
MoleculeChains Sequence LengthOrganismDetailsImage
Neutralizing antibody, LMIV230-01 Single-chain FvD [auth H],
E [auth I],
F [auth J]
257Homo sapiensMutation(s): 0 
Entity Groups  
Sequence Clusters30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
Sequence Annotations
Expand
  • Reference Sequence
Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.00 Å
  • R-Value Free:  0.233 (Depositor), 0.240 (DCC) 
  • R-Value Work:  0.191 (Depositor), 0.200 (DCC) 
Space Group: P 31
Unit Cell:
Length ( Å )Angle ( ˚ )
a = 144.02α = 90
b = 144.02β = 90
c = 54.53γ = 120
Software Package:
Software NamePurpose
REFMACrefinement
XDSdata reduction
XDSdata scaling
PHASERphasing

Structure Validation

View Full Validation Report



Entry History & Funding Information

Deposition Data


Funding OrganizationLocationGrant Number
National Institutes of Health/National Institute Of Allergy and Infectious Diseases (NIH/NIAID)United States1ZIAAI001236

Revision History  (Full details and data files)

  • Version 1.0: 2021-03-31
    Type: Initial release
  • Version 1.1: 2021-04-07
    Changes: Database references
  • Version 1.2: 2024-11-06
    Changes: Data collection, Database references, Structure summary