7SNY | pdb_00007sny

2.10A Resolution Structure of NanoBiT Complementation Reporter Large Subunit LgBiT

• PDB DOI: https://doi.org/10.2210/pdb7SNY/pdb

• Classification: OXIDOREDUCTASE
• Organism(s): Oplophorus gracilirostris
• Expression System: Escherichia coli KRX
• Mutation(s): Yes 


• Deposited: 2021-10-28 Released: 2022-11-16 
• Deposition Author(s): Lovell, S., Mehzabeen, N., Battaile, K.P., Wood, M.G., Encell, L.P., Wood, K.V.
• Funding Organization(s): National Institutes of Health/National Institute of General Medical Sciences (NIH/NIGMS)

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Experimental Data Snapshot

• Method: X-RAY DIFFRACTION
• Resolution: 2.10 Å
• R-Value Free: 
  0.277 (Depositor), 0.280 (DCC) 
• R-Value Work: 
  0.221 (Depositor), 0.220 (DCC) 
• R-Value Observed: 
  0.223 (Depositor) 

Starting Model: experimental

Literature

2.10A Resolution Structure of NanoBiT Complementation Reporter Large Subunit LgBiT

Encell, L.P., Lovell, S., Mehzabeen, N., Battaile, K.P., Wood, M.G., Wood, K.V.

To be published.

Biological Assembly 1  

Global Symmetry: Asymmetric - C1 
Global Stoichiometry: Monomer - A1 

Biological assembly 1 assigned by authors.

Biological Assembly Evidence: gel filtration

Macromolecule Content 

• Total Structure Weight: 18.57 kDa 
• Atom Count: 1,263 
• Modeled Residue Count: 159 
• Deposited Residue Count: 165 
• Unique protein chains: 1

Macromolecules

Entity ID: 1
Molecule	Chains	Sequence Length	Organism	Details	Image
Oplophorus-luciferin 2-monooxygenase catalytic subunit	A	165	Oplophorus gracilirostris	Mutation(s): 28  EC: 1.13.12.13
UniProt
Find proteins for Q9GV45 (Oplophorus gracilirostris) Explore Q9GV45  Go to UniProtKB:  Q9GV45

Experimental Data & Validation

Experimental Data

• Method: X-RAY DIFFRACTION
• Resolution: 2.10 Å
• R-Value Free:  0.277 (Depositor), 0.280 (DCC) 
• R-Value Work:  0.221 (Depositor), 0.220 (DCC) 
• R-Value Observed: 0.223 (Depositor) 

Space Group: P 4₁ 2₁ 2

Unit Cell:

Length ( Å )	Angle ( ˚ )
a = 62.342	α = 90
b = 62.342	β = 90
c = 104.811	γ = 90

Software Package:

Software Name	Purpose
XDS	data reduction
Aimless	data scaling
PHASER	phasing
PHENIX	refinement
PDB_EXTRACT	data extraction

Structure Validation

Entry History & Funding Information

Deposition Data

• Released Date: 2022-11-16 
Deposition Author(s): Lovell, S., Mehzabeen, N., Battaile, K.P., Wood, M.G., Encell, L.P., Wood, K.V.

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Funding Organization	Location	Grant Number
National Institutes of Health/National Institute of General Medical Sciences (NIH/NIGMS)	United States	P30 GM110761

Revision History  

• Version 1.0: 2022-11-16
  Type: Initial release
  
• Version 1.1: 2023-10-18
  Changes: Data collection, Refinement description