7TWZ | pdb_00007twz

Crystal Structure of NADP-linked putative oxidoreductase from Klebsiella pneumoniae

PDB DOI: https://doi.org/10.2210/pdb7TWZ/pdb

Classification: OXIDOREDUCTASE
Organism(s): Klebsiella pneumoniae subsp. pneumoniae HS11286
Expression System: Escherichia coli BL21(DE3)
Mutation(s): No

Deposited: 2022-02-07 Released: 2022-02-23
Deposition Author(s): Seattle Structural Genomics Center for Infectious Disease (SSGCID)
Funding Organization(s): National Institutes of Health/National Institute Of Allergy and Infectious Diseases (NIH/NIAID)

Experimental Data Snapshot

Method: X-RAY DIFFRACTION
Resolution: 2.10 Å
R-Value Free:
0.217 (Depositor), 0.220 (DCC)
R-Value Work:
0.183 (Depositor), 0.180 (DCC)
R-Value Observed:
0.183 (Depositor)

Starting Model: experimental
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wwPDB Validation 3D Report Full Report

Ligand Structure Quality Assessment

This is version 1.1 of the entry. See complete history.

Literature

Crystal Structure of NADP-linked putative oxidoreductase from Klebsiella pneumoniae

Bolejack, M.J., Abendroth, J., Lorimer, D.D., Horanyi, P.S., Edwards, T.E.

To be published.

Macromolecule Content

Total Structure Weight: 213.85 kDa
Atom Count: 15,983
Modeled Residue Count: 1,788
Deposited Residue Count: 1,836
Unique protein chains: 1

Macromolecules

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(by identity cutoff) | 3D Structure

Entity ID: 1
Molecule	Chains	Sequence Length	Organism	Details	Image
Putative oxidoreductase, NAD(P)-linked	A, B, C, D, E A, B, C, D, E, F	306	Klebsiella pneumoniae subsp. pneumoniae HS11286	Mutation(s): 0 Gene Names: KPHS_29670
UniProt
Find proteins for A0A0H3GP70 (Klebsiella pneumoniae subsp. pneumoniae (strain HS11286)) Explore A0A0H3GP70 Go to UniProtKB: A0A0H3GP70
Entity Groups
Sequence Clusters	30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt Group	A0A0H3GP70
Sequence Annotations Expand
Reference Sequence

Small Molecules

Ligands 3 Unique
ID	Chains	Name / Formula / InChI Key	2D Diagram	3D Interactions
NAP (Subject of Investigation/LOI) Query on NAP Download Ideal Coordinates CCD File SDF format, chain G [auth A] SDF format, chain P [auth C] SDF format, chain S [auth D] SDF format, chain T [auth E] SDF format, chain V [auth F] SDF format, chain L [auth B] MOL2 format, chain G [auth A] MOL2 format, chain P [auth C] MOL2 format, chain S [auth D] MOL2 format, chain T [auth E] MOL2 format, chain V [auth F] MOL2 format, chain L [auth B] mmCIF format, chain G [auth A] mmCIF format, chain P [auth C] mmCIF format, chain S [auth D] mmCIF format, chain T [auth E] mmCIF format, chain V [auth F] mmCIF format, chain L [auth B]	G [auth A] L [auth B] P [auth C] S [auth D] T [auth E] G [auth A], L [auth B], P [auth C], S [auth D], T [auth E], V [auth F]	NADP NICOTINAMIDE-ADENINE-DINUCLEOTIDE PHOSPHATE C₂₁ H₂₈ N₇ O₁₇ P₃ XJLXINKUBYWONI-NNYOXOHSSA-N		Interactions Focus chain G [auth A] Focus chain L [auth B] Focus chain P [auth C] Focus chain S [auth D] Focus chain T [auth E] Focus chain V [auth F] Interactions & Density Focus chain G [auth A] Focus chain L [auth B] Focus chain P [auth C] Focus chain S [auth D] Focus chain T [auth E] Focus chain V [auth F]
PEG Query on PEG Download Ideal Coordinates CCD File SDF format, chain I [auth A] SDF format, chain J [auth A] SDF format, chain O [auth B] SDF format, chain W [auth F] MOL2 format, chain I [auth A] MOL2 format, chain J [auth A] MOL2 format, chain O [auth B] MOL2 format, chain W [auth F] mmCIF format, chain I [auth A] mmCIF format, chain J [auth A] mmCIF format, chain O [auth B] mmCIF format, chain W [auth F]	I [auth A], J [auth A], O [auth B], W [auth F]	DI(HYDROXYETHYL)ETHER C₄ H₁₀ O₃ MTHSVFCYNBDYFN-UHFFFAOYSA-N		Interactions Focus chain I [auth A] Focus chain J [auth A] Focus chain O [auth B] Focus chain W [auth F] Interactions & Density Focus chain I [auth A] Focus chain J [auth A] Focus chain O [auth B] Focus chain W [auth F]
ACT Query on ACT Download Ideal Coordinates CCD File SDF format, chain H [auth A] SDF format, chain N [auth B] SDF format, chain Q [auth C] SDF format, chain R [auth C] SDF format, chain U [auth E] SDF format, chain M [auth B] SDF format, chain K [auth A] MOL2 format, chain H [auth A] MOL2 format, chain N [auth B] MOL2 format, chain Q [auth C] MOL2 format, chain R [auth C] MOL2 format, chain U [auth E] MOL2 format, chain M [auth B] MOL2 format, chain K [auth A] mmCIF format, chain H [auth A] mmCIF format, chain N [auth B] mmCIF format, chain Q [auth C] mmCIF format, chain R [auth C] mmCIF format, chain U [auth E] mmCIF format, chain M [auth B] mmCIF format, chain K [auth A]	H [auth A] K [auth A] M [auth B] N [auth B] Q [auth C] H [auth A], K [auth A], M [auth B], N [auth B], Q [auth C], R [auth C], U [auth E]	ACETATE ION C₂ H₃ O₂ QTBSBXVTEAMEQO-UHFFFAOYSA-M		Interactions Focus chain H [auth A] Focus chain K [auth A] Focus chain M [auth B] Focus chain N [auth B] Focus chain Q [auth C] Focus chain R [auth C] Focus chain U [auth E] Interactions & Density Focus chain H [auth A] Focus chain K [auth A] Focus chain M [auth B] Focus chain N [auth B] Focus chain Q [auth C] Focus chain R [auth C] Focus chain U [auth E]