8A0Z | pdb_00008a0z

Crystal structure of Candida auris dihydrofolate reductase complexed with NADPH and pyrimethamine

PDB DOI: https://doi.org/10.2210/pdb8A0Z/pdb

Classification: HYDROLASE
Organism(s): Candidozyma auris
Expression System: Escherichia coli
Mutation(s): No

Deposited: 2022-05-30 Released: 2023-06-14
Deposition Author(s): Kirkman, T.K., Dias, M.V.B.
Funding Organization(s): UK Research and Innovation (UKRI)

Experimental Data Snapshot

Method: X-RAY DIFFRACTION
Resolution: 1.70 Å
R-Value Free:
0.223 (Depositor), 0.220 (DCC)
R-Value Work:
0.190 (Depositor), 0.190 (DCC)
R-Value Observed:
0.192 (Depositor)

Starting Model: experimental
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wwPDB Validation 3D Report Full Report

Ligand Structure Quality Assessment

This is version 1.1 of the entry. See complete history.

Literature

Crystal structure of candida auris

Kirkman, T.K., Dias, M.V.B.

To be published.

Macromolecule Content

Total Structure Weight: 49.86 kDa
Atom Count: 3,827
Modeled Residue Count: 404
Deposited Residue Count: 408
Unique protein chains: 1

Macromolecules

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(by identity cutoff) | 3D Structure

Entity ID: 1
Molecule	Chains	Sequence Length	Organism	Details	Image
Dihydrofolate reductase	A [auth B], B [auth A]	204	Candidozyma auris	Mutation(s): 0 Gene Names: QG37_02791 EC: 1.5.1.3
UniProt
Find proteins for A0A0L0P1H8 (Candidozyma auris) Explore A0A0L0P1H8 Go to UniProtKB: A0A0L0P1H8
Entity Groups
Sequence Clusters	30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt Group	A0A0L0P1H8
Sequence Annotations Expand
Reference Sequence

Small Molecules

Ligands 4 Unique
ID	Chains	Name / Formula / InChI Key	2D Diagram	3D Interactions
NDP (Subject of Investigation/LOI) Query on NDP Download Ideal Coordinates CCD File SDF format, chain C [auth B] SDF format, chain G [auth A] MOL2 format, chain C [auth B] MOL2 format, chain G [auth A] mmCIF format, chain C [auth B] mmCIF format, chain G [auth A]	C [auth B], G [auth A]	NADPH DIHYDRO-NICOTINAMIDE-ADENINE-DINUCLEOTIDE PHOSPHATE C₂₁ H₃₀ N₇ O₁₇ P₃ ACFIXJIJDZMPPO-NNYOXOHSSA-N		Interactions Focus chain C [auth B] Focus chain G [auth A] Interactions & Density Focus chain C [auth B] Focus chain G [auth A]
CP6 (Subject of Investigation/LOI) Query on CP6 Download Ideal Coordinates CCD File SDF format, chain D [auth B] SDF format, chain H [auth A] MOL2 format, chain D [auth B] MOL2 format, chain H [auth A] mmCIF format, chain D [auth B] mmCIF format, chain H [auth A]	D [auth B], H [auth A]	5-(4-CHLORO-PHENYL)-6-ETHYL-PYRIMIDINE-2,4-DIAMINE C₁₂ H₁₃ Cl N₄ WKSAUQYGYAYLPV-UHFFFAOYSA-N		Interactions Focus chain D [auth B] Focus chain H [auth A] Interactions & Density Focus chain D [auth B] Focus chain H [auth A]
EPE Query on EPE Download Ideal Coordinates CCD File SDF format, chain F [auth B] SDF format, chain I [auth A] MOL2 format, chain F [auth B] MOL2 format, chain I [auth A] mmCIF format, chain F [auth B] mmCIF format, chain I [auth A]	F [auth B], I [auth A]	4-(2-HYDROXYETHYL)-1-PIPERAZINE ETHANESULFONIC ACID C₈ H₁₈ N₂ O₄ S JKMHFZQWWAIEOD-UHFFFAOYSA-N		Interactions Focus chain F [auth B] Focus chain I [auth A] Interactions & Density Focus chain F [auth B] Focus chain I [auth A]
NO3 Query on NO3 Download Ideal Coordinates CCD File SDF format, chain E [auth B] SDF format, chain J [auth A] MOL2 format, chain E [auth B] MOL2 format, chain J [auth A] mmCIF format, chain E [auth B] mmCIF format, chain J [auth A]	E [auth B], J [auth A]	NITRATE ION N O₃ NHNBFGGVMKEFGY-UHFFFAOYSA-N		Interactions Focus chain E [auth B] Focus chain J [auth A] Interactions & Density Focus chain E [auth B] Focus chain J [auth A]