8C1J | pdb_00008c1j

Crystal Structure of Mus musculus Protein Arginine Methyltransferase 2 in complex with RSF1_18-30

• PDB DOI: https://doi.org/10.2210/pdb8C1J/pdb

• Classification: TRANSFERASE
• Organism(s): Mus musculus, Spodoptera aff. frugiperda 1 BOLD-2017
• Expression System: Spodoptera aff. frugiperda 1 BOLD-2017
• Mutation(s): No 


• Deposited: 2022-12-20 Released: 2024-01-10 
• Deposition Author(s): Cura, V., Troffer-Charlier, N., Marechal, N., Bonnefond, L., Cavarelli, J.
• Funding Organization(s): Not funded

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Experimental Data Snapshot

• Method: X-RAY DIFFRACTION
• Resolution: 2.00 Å
• R-Value Free: 
  0.206 (Depositor), 0.200 (DCC) 
• R-Value Work: 
  0.180 (Depositor), 0.180 (DCC) 
• R-Value Observed: 
  0.181 (Depositor) 

Starting Model: experimental

Literature

Crystal Structure of Mus musculus Protein Arginine Methyltransferase 2 in complex with RSF1_18-30

Cura, V., Troffer-Charlier, N., Marechal, N., Bonnefond, L., Cavarelli, J.

To be published.

Biological Assembly 1  

Global Symmetry: Cyclic - C2  (Explore in 3D)
Global Stoichiometry: Hetero 4-mer - A2B2 Pseudo Symmetry: Asymmetric - C1 
Pseudo Stoichiometry: Hetero 4-mer - A2B1C1 

Biological assembly 1 assigned by authors.

Biological Assembly Evidence: mass spectrometry

Macromolecule Content 

• Total Structure Weight: 42.56 kDa 
• Atom Count: 2,941 
• Modeled Residue Count: 346 
• Deposited Residue Count: 369 
• Unique protein chains: 2

Macromolecules

Entity ID: 1
Molecule	Chains	Sequence Length	Organism	Details	Image
Protein arginine N-methyltransferase 2	A	356	Mus musculus	Mutation(s): 0  Gene Names: Prmt2, Hrmt1l1 EC: 2.1.1.319
UniProt
Find proteins for Q3UKX1 (Mus musculus) Explore Q3UKX1  Go to UniProtKB:  Q3UKX1

Entity ID: 2
Molecule	Chains	Sequence Length	Organism	Details	Image
RNA-binding protein Rsf1-like	B	13	Spodoptera aff. frugiperda 1 BOLD-2017	Mutation(s): 0
UniProt
Find proteins for A0A2H1V327 (Spodoptera frugiperda) Explore A0A2H1V327  Go to UniProtKB:  A0A2H1V327

Small Molecules

Ligands 1 Unique
ID	Chains	Name / Formula / InChI Key	2D Diagram
QVR (Subject of Investigation/LOI)	C [auth B]	(2~{R},3~{R},4~{S},5~{R})-2-(6-aminopurin-9-yl)-5-[(~{E})-prop-1-enyl]oxolane-3,4-diol C12 H15 N5 O3 UYHMWDPUDJRZGB-JVINVVEESA-N

Experimental Data & Validation

Experimental Data

• Method: X-RAY DIFFRACTION
• Resolution: 2.00 Å
• R-Value Free:  0.206 (Depositor), 0.200 (DCC) 
• R-Value Work:  0.180 (Depositor), 0.180 (DCC) 
• R-Value Observed: 0.181 (Depositor) 

Space Group: C 2 2 2₁

Unit Cell:

Length ( Å )	Angle ( ˚ )
a = 66.178	α = 90
b = 114.964	β = 90
c = 133.181	γ = 90

Software Package:

Software Name	Purpose
PHENIX	refinement
XDS	data reduction
Aimless	data scaling
PHENIX	phasing

Structure Validation

Entry History & Funding Information

Deposition Data

• Released Date: 2024-01-10 
Deposition Author(s): Cura, V., Troffer-Charlier, N., Marechal, N., Bonnefond, L., Cavarelli, J.

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Funding Organization	Location	Grant Number
Not funded		--

Revision History  

• Version 1.0: 2024-01-10
  Type: Initial release
  
• Version 1.1: 2024-11-20
  Changes: Structure summary