8UUT | pdb_00008uut

Structure of Serratia entomophila antifeeding prophage Fibre foot domain (Afp13)

PDB DOI: https://doi.org/10.2210/pdb8UUT/pdb

Classification: STRUCTURAL PROTEIN
Organism(s): Serratia entomophila
Expression System: Escherichia coli K-12
Mutation(s): No

Deposited: 2023-11-01 Released: 2025-03-19
Deposition Author(s): Young, P.G., Hurst, M.R.H.
Funding Organization(s): Ministry of Business, Innovation and Employment (New Zealand)

Experimental Data Snapshot

Method: X-RAY DIFFRACTION
Resolution: 1.83 Å
R-Value Free:
0.217 (Depositor), 0.217 (DCC)
R-Value Work:
0.180 (Depositor), 0.181 (DCC)
R-Value Observed:
0.182 (Depositor)

Starting Model: experimental
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wwPDB Validation 3D Report Full Report

This is version 1.0 of the entry. See complete history.

Literature

Structure of Serratia entomophila antifeeding prophage Fibre foot domain (Afp13)

Young, P.G., Hurst, M.R.H.

To be published.

Macromolecule Content

Total Structure Weight: 98.11 kDa
Atom Count: 5,827
Modeled Residue Count: 714
Deposited Residue Count: 966
Unique protein chains: 1

Macromolecules

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(by identity cutoff) | 3D Structure

Entity ID: 1
Molecule	Chains	Sequence Length	Organism	Details	Image
Anti-feeding prophage Fibre	A, B, C, D, E A, B, C, D, E, F	161	Serratia entomophila	Mutation(s): 0 Gene Names: afp13
UniProt
Find proteins for Q6HAC6 (Serratia entomophila) Explore Q6HAC6 Go to UniProtKB: Q6HAC6
Entity Groups
Sequence Clusters	30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt Group	Q6HAC6
Sequence Annotations Expand
Reference Sequence

Experimental Data & Validation

Experimental Data

Method: X-RAY DIFFRACTION
Resolution: 1.83 Å
R-Value Free: 0.217 (Depositor), 0.217 (DCC)
R-Value Work: 0.180 (Depositor), 0.181 (DCC)
R-Value Observed: 0.182 (Depositor)

Space Group: P 3 2 1

Unit Cell:

Length ( Å )	Angle ( ˚ )
a = 130.559	α = 90
b = 130.559	β = 90
c = 76.409	γ = 120

Software Package:

Software Name	Purpose
PHENIX	refinement
XDS	data reduction
Aimless	data scaling
PHASER	phasing

Structure Validation

View Full Validation Report

Entry History & Funding Information

Deposition Data

Released Date: 2025-03-19

Deposition Author(s):

Funding Organization	Location	Grant Number
Ministry of Business, Innovation and Employment (New Zealand)	New Zealand	C10X1805

Revision History (Full details and data files)

Version 1.0: 2025-03-19
Type: Initial release

RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729.