8UXT | pdb_00008uxt

Acinetobacter baumannii Tse15 Rhs effector, toxin cleavage mutant (D1369N, D1391N)


Experimental Data Snapshot

  • Method: ELECTRON MICROSCOPY
  • Resolution: 1.77 Å
  • Aggregation State: PARTICLE 
  • Reconstruction Method: SINGLE PARTICLE 

wwPDB Validation   3D Report Full Report


This is version 1.2 of the entry. See complete history


Literature

Structure of a Rhs effector clade domain provides mechanistic insights into type VI secretion system toxin delivery.

Hayes, B.K.Harper, M.Venugopal, H.Lewis, J.M.Wright, A.Lee, H.C.Steele, J.R.Steer, D.L.Schittenhelm, R.B.Boyce, J.D.McGowan, S.

(2024) Nat Commun 15: 8709-8709

  • DOI: https://doi.org/10.1038/s41467-024-52950-x
  • Primary Citation of Related Structures:  
    8UXT, 8UY4

  • PubMed Abstract: 

    The type VI secretion system (T6SS) is a molecular machine utilised by many Gram-negative bacteria to deliver antibacterial toxins into adjacent cells. Here we present the structure of Tse15, a T6SS Rhs effector from the nosocomial pathogen Acinetobacter baumannii. Tse15 forms a triple layered β-cocoon Rhs domain with an N-terminal α-helical clade domain and an unfolded C-terminal toxin domain inside the Rhs cage. Tse15 is cleaved into three domains, through independent auto-cleavage events involving aspartyl protease activity for toxin self-cleavage and a nucleophilic glutamic acid for N-terminal clade cleavage. Proteomic analyses identified that significantly more peptides from the N-terminal clade and toxin domains were secreted than from the Rhs cage, suggesting toxin delivery often occurs without the cage. We propose the clade domain acts as an internal chaperone to mediate toxin tethering to the T6SS machinery. Conservation of the clade domain in other Gram-negative bacteria suggests this may be a common mechanism for delivery.


  • Organizational Affiliation
    • Biomedicine Discovery Institute, Department of Microbiology, Monash University, Clayton, VIC, Australia.

Macromolecules
Find similar proteins by:  (by identity cutoff)  |  3D Structure
Entity ID: 1
MoleculeChains Sequence LengthOrganismDetailsImage
Tse151,596Acinetobacter baumannii AB307-0294Mutation(s): 2 
Gene Names: ABBFA_02439
EC: 3.1
UniProt
Find proteins for A0A5K6CSR3 (Acinetobacter baumannii (strain AB307-0294))
Explore A0A5K6CSR3 
Go to UniProtKB:  A0A5K6CSR3
Entity Groups  
Sequence Clusters30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt GroupA0A5K6CSR3
Sequence Annotations
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  • Reference Sequence
Experimental Data & Validation

Experimental Data

  • Method: ELECTRON MICROSCOPY
  • Resolution: 1.77 Å
  • Aggregation State: PARTICLE 
  • Reconstruction Method: SINGLE PARTICLE 
EM Software:
TaskSoftware PackageVersion
MODEL REFINEMENTPHENIX

Structure Validation

View Full Validation Report



Entry History & Funding Information

Deposition Data


Funding OrganizationLocationGrant Number
National Health and Medical Research Council (NHMRC, Australia)Australia1165036
National Health and Medical Research Council (NHMRC, Australia)Australia1128981

Revision History  (Full details and data files)

  • Version 1.0: 2024-10-09
    Type: Initial release
  • Version 1.1: 2024-10-23
    Changes: Data collection, Database references
  • Version 1.2: 2025-05-14
    Changes: Data collection