8XJQ | pdb_00008xjq

Crystal structure of a sulfotransferase S4 in complex with PAP and PNPS

• PDB DOI: https://doi.org/10.2210/pdb8XJQ/pdb

• Classification: TRANSFERASE
• Organism(s): Bambusicola thoracicus
• Expression System: Escherichia coli 'BL21-Gold(DE3)pLysS AG
• Mutation(s): No 


• Deposited: 2023-12-22 Released: 2024-12-25 
• Deposition Author(s): Gao, J., Wang, H., Chen, Y.Y., Yang, S.Y., Yin, L., Liu, W.D., Li, J.S.
• Funding Organization(s): National Natural Science Foundation of China (NSFC)

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Experimental Data Snapshot

• Method: X-RAY DIFFRACTION
• Resolution: 1.78 Å
• R-Value Free: 
  0.204 (Depositor), 0.207 (DCC) 
• R-Value Work: 
  0.178 (Depositor), 0.182 (DCC) 
• R-Value Observed: 
  0.179 (Depositor) 

Starting Model: experimental

Literature

Crystal structure of a sulfotransferase S4 in complex with PAP and PNPS

Gao, J., Wang, H., Chen, Y.Y., Yang, S.Y., Yin, L., Liu, W.D., Li, J.S.

To be published.

Biological Assembly 1  

Global Symmetry: Asymmetric - C1 
Global Stoichiometry: Monomer - A1 

Biological assembly 1 assigned by authors and generated by PISA (software)

Biological Assembly Evidence: gel filtration

Macromolecule Content 

• Total Structure Weight: 35.1 kDa 
• Atom Count: 2,734 
• Modeled Residue Count: 294 
• Deposited Residue Count: 296 
• Unique protein chains: 1

Macromolecules

Entity ID: 1
Molecule	Chains	Sequence Length	Organism	Details	Image
Sulfotransferase	A	296	Bambusicola thoracicus	Mutation(s): 0  Gene Names: CIB84_007067 EC: 2.8.2
UniProt
Find proteins for A0A2P4SYK2 (Bambusicola thoracicus) Explore A0A2P4SYK2  Go to UniProtKB:  A0A2P4SYK2

Small Molecules

Ligands 3 Unique
ID	Chains	Name / Formula / InChI Key	2D Diagram
PPS (Subject of Investigation/LOI)	C [auth A]	3'-PHOSPHATE-ADENOSINE-5'-PHOSPHATE SULFATE C10 H15 N5 O13 P2 S GACDQMDRPRGCTN-KQYNXXCUSA-N
4NS (Subject of Investigation/LOI)	D [auth A]	4-nitrophenyl sulfate C6 H5 N O6 S JBGHTSSFSSUKLR-UHFFFAOYSA-N
NPO (Subject of Investigation/LOI)	B [auth A], E [auth A]	P-NITROPHENOL C6 H5 N O3 BTJIUGUIPKRLHP-UHFFFAOYSA-N

Experimental Data & Validation

Experimental Data

• Method: X-RAY DIFFRACTION
• Resolution: 1.78 Å
• R-Value Free:  0.204 (Depositor), 0.207 (DCC) 
• R-Value Work:  0.178 (Depositor), 0.182 (DCC) 
• R-Value Observed: 0.179 (Depositor) 

Space Group: P 4₃ 2₁ 2

Unit Cell:

Length ( Å )	Angle ( ˚ )
a = 78.045	α = 90
b = 78.045	β = 90
c = 140.124	γ = 90

Software Package:

Software Name	Purpose
PHENIX	refinement
XDS	data scaling
XDS	data reduction
PHASER	phasing

Structure Validation

Entry History & Funding Information

Deposition Data

• Released Date: 2024-12-25 
Deposition Author(s): Gao, J., Wang, H., Chen, Y.Y., Yang, S.Y., Yin, L., Liu, W.D., Li, J.S.

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Funding Organization	Location	Grant Number
National Natural Science Foundation of China (NSFC)	China	--

Revision History  

• Version 1.0: 2024-12-25
  Type: Initial release