8Y1R | pdb_00008y1r

in situ room temperature Laue crystallography

• PDB DOI: https://doi.org/10.2210/pdb8Y1R/pdb

• Classification: LYASE
• Organism(s): Gallus gallus
• Mutation(s): No 


• Deposited: 2024-01-25 Released: 2024-02-07 
• Deposition Author(s): Wang, Z.J., Wang, S.S., Pan, Q.Y., Yu, L., Su, Z.H., Yang, T.Y., Wang, Y.Z., Zhang, W.Z., Hao, Q., Gao, X.Y.
• Funding Organization(s): National Basic Research Program of China (973 Program)

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Experimental Data Snapshot

• Method: X-RAY DIFFRACTION
• Resolution: 2.00 Å
• R-Value Free: 
  0.260 (Depositor), 0.260 (DCC) 
• R-Value Work: 
  0.201 (Depositor), 0.200 (DCC) 
• R-Value Observed: 
  0.207 (Depositor) 

Starting Model: experimental

Literature

Laueprocess: a software package for processing Laue diffraction data

Wang, Z.J., Pan, C., Yu, L., He, B.C., Su, Z.H., Zhang, W.Z., Wang, S.S., Sun, B., Wen, W.W., Hao, Q.

(2025) J Appl Crystallogr 58: 1496-1510

• DOI: https://doi.org/10.1107/S1600576725005023

Biological Assembly 1  

Global Symmetry: Asymmetric - C1 
Global Stoichiometry: Monomer - A1 

Biological assembly 1 assigned by authors.

Biological Assembly Evidence: electron microscopy

Macromolecule Content 

• Total Structure Weight: 14.33 kDa 
• Atom Count: 1,074 
• Modeled Residue Count: 129 
• Deposited Residue Count: 129 
• Unique protein chains: 1

Macromolecules

Entity ID: 1
Molecule	Chains	Sequence Length	Organism	Details	Image
Lysozyme C	A	129	Gallus gallus	Mutation(s): 0  EC: 3.2.1.17
UniProt
Find proteins for P00698 (Gallus gallus) Explore P00698  Go to UniProtKB:  P00698

Experimental Data & Validation

Experimental Data

• Method: X-RAY DIFFRACTION
• Resolution: 2.00 Å
• R-Value Free:  0.260 (Depositor), 0.260 (DCC) 
• R-Value Work:  0.201 (Depositor), 0.200 (DCC) 
• R-Value Observed: 0.207 (Depositor) 

Space Group: P 4₃ 2₁ 2

Unit Cell:

Length ( Å )	Angle ( ˚ )
a = 78.56	α = 90
b = 78.56	β = 90
c = 37.56	γ = 90

Software Package:

Software Name	Purpose
PHENIX	refinement
LaueView	data reduction
LaueView	data scaling
PHENIX	phasing

Structure Validation

Entry History & Funding Information

Deposition Data

• Released Date: 2024-02-07 
Deposition Author(s): Wang, Z.J., Wang, S.S., Pan, Q.Y., Yu, L., Su, Z.H., Yang, T.Y., Wang, Y.Z., Zhang, W.Z., Hao, Q., Gao, X.Y.

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Funding Organization	Location	Grant Number
National Basic Research Program of China (973 Program)	China	--

Revision History  

• Version 1.0: 2024-02-07
  Type: Initial release
  
• Version 1.1: 2024-10-02
  Changes: Database references
• Version 1.2: 2024-11-06
  Changes: Structure summary
• Version 1.3: 2025-08-13
  Changes: Database references