8Y72 | pdb_00008y72

Classification: MEMBRANE PROTEIN
Organism(s): Homo sapiens, Rattus norvegicus, Bos taurus, synthetic construct
Expression System: Spodoptera frugiperda
Mutation(s): Yes
Membrane Protein: Yes MemProtMD

Deposited: 2024-02-03 Released: 2025-08-06
Deposition Author(s): Luo, P., Xu, Y., Wang, Y., Zhuang, Y., Xu, H.E.
Funding Organization(s): National Natural Science Foundation of China (NSFC)

Experimental Data Snapshot

wwPDB Validation 3D Report Full Report

This is version 1.0 of the entry. See complete history.

Literature

Macromolecule Content

Macromolecules

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Entity ID: 1
Molecule	Chains	Sequence Length	Organism	Details	Image
Guanine nucleotide-binding protein G(i) subunit alpha-1	A	354	Homo sapiens	Mutation(s): 2 Gene Names: GNAI1 EC: 3.6.5 Membrane Entity: Yes
UniProt & NIH Common Fund Data Resources
Find proteins for P63096 (Homo sapiens) Explore P63096 Go to UniProtKB: P63096
PHAROS: P63096 GTEx: ENSG00000127955
Entity Groups
Sequence Clusters	30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt Group	P63096
Sequence Annotations Expand
Reference Sequence

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Entity ID: 2
Molecule	Chains	Sequence Length	Organism	Details	Image
Guanine nucleotide-binding protein G(I)/G(S)/G(T) subunit beta-1	B	353	Rattus norvegicus	Mutation(s): 0 Gene Names: Gnb1
UniProt
Find proteins for P54311 (Rattus norvegicus) Explore P54311 Go to UniProtKB: P54311
Entity Groups
Sequence Clusters	30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt Group	P54311
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Reference Sequence

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Entity ID: 3
Molecule	Chains	Sequence Length	Organism	Details	Image
Guanine nucleotide-binding protein G(I)/G(S)/G(O) subunit gamma-2	C	68	Bos taurus	Mutation(s): 0 Gene Names: GNG2 Membrane Entity: Yes
UniProt
Find proteins for P63212 (Bos taurus) Explore P63212 Go to UniProtKB: P63212
Entity Groups
Sequence Clusters	30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt Group	P63212
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Reference Sequence

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Entity ID: 4
Molecule	Chains	Sequence Length	Organism	Details	Image
scFv16	D [auth E]	248	synthetic construct	Mutation(s): 0
Entity Groups
Sequence Clusters	30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
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Reference Sequence

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Entity ID: 5
Molecule	Chains	Sequence Length	Organism	Details	Image
Mu-type opioid receptor	E [auth R]	403	Homo sapiens	Mutation(s): 0 Gene Names: OPRM1, MOR1 Membrane Entity: Yes
UniProt & NIH Common Fund Data Resources
Find proteins for P35372 (Homo sapiens) Explore P35372 Go to UniProtKB: P35372
PHAROS: P35372 GTEx: ENSG00000112038
Entity Groups
Sequence Clusters	30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt Group	P35372
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Reference Sequence

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Entity ID: 6
Molecule	Chains	Sequence Length	Organism	Details	Image
TYR-DAL-GLY-MEA-ETA	F [auth D]	5	synthetic construct	Mutation(s): 0
Sequence Annotations Expand
Reference Sequence

Small Molecules

Ligands 2 Unique
ID	Chains	Name / Formula / InChI Key	2D Diagram	3D Interactions
VV9 (Subject of Investigation/LOI) Query on VV9 Download Ideal Coordinates CCD File SDF format, chain I [auth R] MOL2 format, chain I [auth R] mmCIF format, chain I [auth R]	I [auth R]	(2~{S})-2-(3-bromanyl-4-methoxy-phenyl)-3-(4-chlorophenyl)sulfonyl-1,3-thiazolidine C₁₆ H₁₅ Br Cl N O₃ S₂ PNGJPVDGZNPZHY-INIZCTEOSA-N		Interactions Focus chain I [auth R] Interactions & Density Focus chain I [auth R]
CLR Query on CLR Download Ideal Coordinates CCD File SDF format, chain G [auth R] SDF format, chain H [auth R] MOL2 format, chain G [auth R] MOL2 format, chain H [auth R] mmCIF format, chain G [auth R] mmCIF format, chain H [auth R]	G [auth R], H [auth R]	CHOLESTEROL C₂₇ H₄₆ O HVYWMOMLDIMFJA-DPAQBDIFSA-N		Interactions Focus chain G [auth R] Focus chain H [auth R] Interactions & Density Focus chain G [auth R] Focus chain H [auth R]

Modified Residues 1 Unique
ID	Chains	Type	Formula	2D Diagram	Parent
MEA Query on MEA	F [auth D]	L-PEPTIDE LINKING	C₁₀ H₁₃ N O₂		PHE

Biologically Interesting Molecules (External Reference) 1 Unique

Entity ID: 6
ID	Chains	Name	Type/Class	2D Diagram	3D Interactions
PRD_002308 Query on PRD_002308	F [auth D]	DAMGO	Peptide-like / Synthetic opioid		Interactions Focus chain F [auth D] Interactions & Density Focus chain F [auth D]