9A1K | pdb_00009a1k

Integrative structure of the COX-AIFM1 complex

Integrative structure models are generated using different types of input information, including varied experimental data, physical principles, statistical preferences, and other prior information.

• PDB DOI: https://doi.org/10.2210/pdb9A1K/pdb

• Organism(s): Bos taurus
• Mutation(s): No 


• Deposited: 2021-08-13 Released: 2021-09-17 
• Deposition Author(s): Johannes F. Hevler, Albert J.R. Heck

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Integrative Structure Snapshot

• Multi-Scale: No 
• Multi-State: No 
• Ordered-State: No 
• Deposited Models: 1 
• Representative Model: 1 

Literature

Molecular characterization of a complex of Apoptosis Inducing Factor 1 (AIFM1) with cytochrome c oxidase of the mitochondrial respiratory chain

Johannes F. Hevler, Riccardo Zenezeni Chiozzi, Alfredo Cabrera-Orefice, Ulrich Brandt, Susanne Arnold, Albert J.R. Heck

(2021) Proc Natl Acad Sci U S A 

• DOI: https://doi.org/10.1073/pnas.2106950118

Assembly  

Global Symmetry: Asymmetric - C1 
Global Stoichiometry: Hetero 16-mer - A2B1C1D1E1F1G1H1I1J1K1L1M1N1O1 Local Symmetry: Cyclic - C2  (Explore in 3D)
Local Stoichiometry: Homo 2-mer - A2 

Local Symmetry: Cyclic - C2  (Explore in 3D)
Local Stoichiometry: Homo 2-mer - A2 

Macromolecule Content 

• Total Structure Weight: 386.75 kDa 
• Atom Count: 22,460 
• Modeled Residue Count: 2,984 
• Deposited Residue Count: 2,984 
• Unique protein chains: 15

Macromolecules

Entity ID: 1
Molecule	Chains	Sequence Length	Organism	Details	Image
Cytochrome c oxidase polypeptide I	A	513	Bos taurus	Mutation(s): 0  Gene Names: MT-CO1 EC: 7.1.1.9
UniProt
Find proteins for P00396 (Bos taurus) Explore P00396  Go to UniProtKB:  P00396

Entity ID: 2
Molecule	Chains	Sequence Length	Organism	Details	Image
Cytochrome c oxidase polypeptide II	B	226	Bos taurus	Mutation(s): 0  Gene Names: MT-CO2 EC: 7.1.1.9
UniProt
Find proteins for P68530 (Bos taurus) Explore P68530  Go to UniProtKB:  P68530

Entity ID: 3
Molecule	Chains	Sequence Length	Organism	Details	Image
Cytochrome c oxidase polypeptide III	C	259	Bos taurus	Mutation(s): 0  Gene Names: MT-CO3 EC: 7.1.1.9
UniProt
Find proteins for P00415 (Bos taurus) Explore P00415  Go to UniProtKB:  P00415

Entity ID: 4
Molecule	Chains	Sequence Length	Organism	Details	Image
Cytochrome c oxidase subunit IV isoform 1	D	144	Bos taurus	Mutation(s): 0  Gene Names: COX4I1
UniProt
Find proteins for P00423 (Bos taurus) Explore P00423  Go to UniProtKB:  P00423

Entity ID: 5
Molecule	Chains	Sequence Length	Organism	Details	Image
Cytochrome c oxidase polypeptide Va	E	109	Bos taurus	Mutation(s): 0  Gene Names: COX5A
UniProt
Find proteins for P00426 (Bos taurus) Explore P00426  Go to UniProtKB:  P00426

Entity ID: 6
Molecule	Chains	Sequence Length	Organism	Details	Image
Cytochrome c oxidase polypeptide Vb	F	98	Bos taurus	Mutation(s): 0  Gene Names: COX5B
UniProt
Find proteins for P00428 (Bos taurus) Explore P00428  Go to UniProtKB:  P00428

Entity ID: 7
Molecule	Chains	Sequence Length	Organism	Details	Image
Cytochrome c oxidase polypeptide VIa-heart	G	83	Bos taurus	Mutation(s): 0  Gene Names: COX6A2
UniProt
Find proteins for P07471 (Bos taurus) Explore P07471  Go to UniProtKB:  P07471

Entity ID: 8
Molecule	Chains	Sequence Length	Organism	Details	Image
Cytochrome c oxidase polypeptide VIb	H	86	Bos taurus	Mutation(s): 0  Gene Names: COX6B1
UniProt
Find proteins for P00429 (Bos taurus) Explore P00429  Go to UniProtKB:  P00429

Entity ID: 9
Molecule	Chains	Sequence Length	Organism	Details	Image
Cytochrome c oxidase polypeptide VIc	I	72	Bos taurus	Mutation(s): 0  Gene Names: COX6C
UniProt
Find proteins for P04038 (Bos taurus) Explore P04038  Go to UniProtKB:  P04038

Entity ID: 10
Molecule	Chains	Sequence Length	Organism	Details	Image
Cytochrome c oxidase polypeptide VIIa-heart	J	58	Bos taurus	Mutation(s): 0  Gene Names: COX7A1
UniProt
Find proteins for P07470 (Bos taurus) Explore P07470  Go to UniProtKB:  P07470

Entity ID: 11
Molecule	Chains	Sequence Length	Organism	Details	Image
Cytochrome c oxidase polypeptide VIIb	K	49	Bos taurus	Mutation(s): 0  Gene Names: COX7B
UniProt
Find proteins for P13183 (Bos taurus) Explore P13183  Go to UniProtKB:  P13183

Entity ID: 12
Molecule	Chains	Sequence Length	Organism	Details	Image
Cytochrome c oxidase polypeptide VIIc	L	46	Bos taurus	Mutation(s): 0  Gene Names: COX7C
UniProt
Find proteins for P00430 (Bos taurus) Explore P00430  Go to UniProtKB:  P00430

Entity ID: 13
Molecule	Chains	Sequence Length	Organism	Details	Image
Cytochrome c oxidase polypeptide VIII-heart	M	43	Bos taurus	Mutation(s): 0  Gene Names: COX8B
UniProt
Find proteins for P10175 (Bos taurus) Explore P10175  Go to UniProtKB:  P10175

Entity ID: 14
Molecule	Chains	Sequence Length	Organism	Details	Image
Cytochrome c oxidase subunit NDUFA4	N	80	Bos taurus	Mutation(s): 0  Gene Names: NDUFA4
UniProt
Find proteins for Q01321 (Bos taurus) Explore Q01321  Go to UniProtKB:  Q01321

Entity ID: 15
Molecule	Chains	Sequence Length	Organism	Details	Image
Apoptosis inducing factor 1	O, P	559	Bos taurus	Mutation(s): 0  Gene Names: AIFM1
UniProt
Find proteins for E1BJA2 (Bos taurus) Explore E1BJA2  Go to UniProtKB:  E1BJA2

Experimental Data & Validation

Integrative Structure Snapshot

• Multi-Scale: No 
• Multi-State: No 
• Ordered-State: No 
• Deposited Models: 1 
• Representative Model: 1 

Structure Validation

View Full Validation Report

View Summary Validation Report

Entry History 

Deposition Data

• Released Date: 2021-09-17 
Deposition Author(s): Johannes F. Hevler, Albert J.R. Heck

Revision History  

• Version 1.0: 2021-09-17
  Type: Initial release