9A1O | pdb_00009a1o

Integrative model of the nuclear pore complex in constricted conformation from Schizosaccharomyces pombe


Integrative Structure Snapshot

  • Multi-Scale: No 
  • Multi-State: No 
  • Ordered-State: No 
  • Deposited Models: 1 
  • Representative Model: 1 

This is version 1.0 of the entry. See complete history


Literature

Nuclear pores dilate and constrict in cellulo

Christian E. ZimmerliMatteo AllegrettiVasileios RantosSara K. GoetzAgnieszka Obarska-KosinskaIevgeniia ZagoriyAliaksandr HalavatyiGerhard HummerJulia MahamidJan KosinskiMartin Beck

(2021) Science 

  • DOI: https://doi.org/10.1126/science.abd9776
  • Primary Citation of Related Structures:  
    9A1M, 9A1N, 9A1O

  • PubMed Abstract: 

    In eukaryotic cells, nuclear pore complexes (NPCs) fuse the inner and outer nuclear membranes and mediate nucleocytoplasmic exchange. They are made of 30 different nucleoporins and form a cylindrical architecture around an aqueous central channel. This architecture is highly dynamic in space and time. Variations in NPC diameter have been reported, but the physiological circumstances and the molecular details remain unknown. Here, we combined cryo–electron tomography with integrative structural modeling to capture a molecular movie of the respective large-scale conformational changes in cellulo. Although NPCs of exponentially growing cells adopted a dilated conformation, they reversibly constricted upon cellular energy depletion or conditions of hypertonic osmotic stress. Our data point to a model where the nuclear envelope membrane tension is linked to the conformation of the NPC.


  • Organizational Affiliation
    • Structural and Computational Biology Unit, European Molecular Biology Laboratory (EMBL), 69117 Heidelberg, Germany.

Macromolecules
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Entity ID: 1
MoleculeChains Sequence LengthOrganismDetailsImage
Nup107
L, L1, L10, L11, L12
L, L1, L10, L11, L12, L13, L14, L15, L2, L3, L4, L5, L6, L7, L8, L9
813Schizosaccharomyces pombe (strain 972 / ATCC 24843)Mutation(s): 0 
Gene Names: nup107
UniProt
Find proteins for Q10331 (Schizosaccharomyces pombe (strain 972 / ATCC 24843))
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UniProt GroupQ10331
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Entity ID: 2
MoleculeChains Sequence LengthOrganismDetailsImage
Nup85
P, P1, P10, P11, P12
P, P1, P10, P11, P12, P13, P14, P15, P16, P17, P18, P19, P2, P20, P21, P22, P23, P3, P4, P5, P6, P7, P8, P9
675Schizosaccharomyces pombe (strain 972 / ATCC 24843)Mutation(s): 0 
Gene Names: nup85
UniProt
Find proteins for Q9UUE5 (Schizosaccharomyces pombe (strain 972 / ATCC 24843))
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Entity ID: 3
MoleculeChains Sequence LengthOrganismDetailsImage
Nup120
R, R1, R10, R11, R12
R, R1, R10, R11, R12, R13, R14, R15, R16, R17, R18, R19, R2, R20, R21, R22, R23, R3, R4, R5, R6, R7, R8, R9
1,136Schizosaccharomyces pombe (strain 972 / ATCC 24843)Mutation(s): 0 
Gene Names: nup120
UniProt
Find proteins for O43044 (Schizosaccharomyces pombe (strain 972 / ATCC 24843))
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Entity ID: 4
MoleculeChains Sequence LengthOrganismDetailsImage
Nup37
S, S1, S10, S11, S12
S, S1, S10, S11, S12, S13, S14, S15, S16, S17, S18, S19, S2, S20, S21, S22, S23, S3, S4, S5, S6, S7, S8, S9
391Schizosaccharomyces pombe (strain 972 / ATCC 24843)Mutation(s): 0 
Gene Names: SPAC4F10.18
UniProt
Find proteins for O36030 (Schizosaccharomyces pombe (strain 972 / ATCC 24843))
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Entity ID: 5
MoleculeChains Sequence LengthOrganismDetailsImage
Nup132
Q, Q1, Q10, Q11, Q12
Q, Q1, Q10, Q11, Q12, Q13, Q14, Q15, Q2, Q3, Q4, Q5, Q6, Q7, Q8, Q9
1,162Schizosaccharomyces pombe (strain 972 / ATCC 24843)Mutation(s): 0 
Gene Names: nup132
UniProt
Find proteins for Q9UTH0 (Schizosaccharomyces pombe (strain 972 / ATCC 24843))
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Entity ID: 6
MoleculeChains Sequence LengthOrganismDetailsImage
Nup189c
M, M1, M10, M11, M12
M, M1, M10, M11, M12, M13, M14, M15, M16, M17, M18, M19, M2, M20, M21, M22, M23, M3, M4, M5, M6, M7, M8, M9
844Schizosaccharomyces pombe (strain 972 / ATCC 24843)Mutation(s): 0 
Gene Names: nup189
EC: 3.4.21
UniProt
Find proteins for Q9UTK4 (Schizosaccharomyces pombe (strain 972 / ATCC 24843))
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Entity ID: 7
MoleculeChains Sequence LengthOrganismDetailsImage
Seh1
O, O1, O10, O11, O12
O, O1, O10, O11, O12, O13, O14, O15, O16, O17, O18, O19, O2, O20, O21, O22, O23, O3, O4, O5, O6, O7, O8, O9
339Schizosaccharomyces pombe (strain 972 / ATCC 24843)Mutation(s): 0 
Gene Names: seh1
UniProt
Find proteins for Q10099 (Schizosaccharomyces pombe (strain 972 / ATCC 24843))
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Entity ID: 8
MoleculeChains Sequence LengthOrganismDetailsImage
Sec13
N, N1, N10, N11, N12
N, N1, N10, N11, N12, N13, N14, N15, N16, N17, N18, N19, N2, N20, N21, N22, N23, N3, N4, N5, N6, N7, N8, N9
297Schizosaccharomyces pombe (strain 972 / ATCC 24843)Mutation(s): 0 
Gene Names: sec13
UniProt
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Entity ID: 9
MoleculeChains Sequence LengthOrganismDetailsImage
Ely5
T, T1, T10, T11, T12
T, T1, T10, T11, T12, T13, T14, T15, T16, T17, T18, T19, T2, T20, T21, T22, T23, T3, T4, T5, T6, T7, T8, T9
298Schizosaccharomyces pombe (strain 972 / ATCC 24843)Mutation(s): 0 
Gene Names: ely5
UniProt
Find proteins for O94384 (Schizosaccharomyces pombe (strain 972 / ATCC 24843))
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Entity ID: 10
MoleculeChains Sequence LengthOrganismDetailsImage
Nup184
B, B1, B10, B11, B12
B, B1, B10, B11, B12, B13, B14, B15, B2, B3, B4, B5, B6, B7, B8, B9
1,564Schizosaccharomyces pombe (strain 972 / ATCC 24843)Mutation(s): 0 
Gene Names: nup184
UniProt
Find proteins for Q9P7M8 (Schizosaccharomyces pombe (strain 972 / ATCC 24843))
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Entity ID: 11
MoleculeChains Sequence LengthOrganismDetailsImage
Nup186
C, C1, C10, C11, C12
C, C1, C10, C11, C12, C13, C14, C15, C2, C3, C4, C5, C6, C7, C8, C9
1,647Schizosaccharomyces pombe (strain 972 / ATCC 24843)Mutation(s): 0 
Gene Names: nup186
UniProt
Find proteins for P78847 (Schizosaccharomyces pombe (strain 972 / ATCC 24843))
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Entity ID: 12
MoleculeChains Sequence LengthOrganismDetailsImage
Nup155
D, D1, D10, D11, D12
D, D1, D10, D11, D12, D13, D14, D15, D16, D17, D18, D19, D2, D20, D21, D22, D23, D24, D25, D26, D27, D28, D29, D3, D30, D31, D4, D5, D6, D7, D8, D9
1,315Schizosaccharomyces pombe (strain 972 / ATCC 24843)Mutation(s): 0 
Gene Names: SPAC890.06
UniProt
Find proteins for Q9URX8 (Schizosaccharomyces pombe (strain 972 / ATCC 24843))
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Entity ID: 13
MoleculeChains Sequence LengthOrganismDetailsImage
Nup97
Y, Y1, Y10, Y11, Y12
Y, Y1, Y10, Y11, Y12, Y13, Y14, Y15, Y16, Y17, Y18, Y19, Y2, Y20, Y21, Y22, Y23, Y24, Y25, Y26, Y27, Y28, Y29, Y3, Y30, Y31, Y4, Y5, Y6, Y7, Y8, Y9
851Schizosaccharomyces pombe (strain 972 / ATCC 24843)Mutation(s): 0 
Gene Names: mug87
UniProt
Find proteins for O94418 (Schizosaccharomyces pombe (strain 972 / ATCC 24843))
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Entity ID: 14
MoleculeChains Sequence LengthOrganismDetailsImage
Nsp1
J, J1, J10, J11, J12
J, J1, J10, J11, J12, J13, J14, J15, J16, J17, J18, J19, J2, J20, J21, J22, J23, J24, J25, J26, J27, J28, J29, J3, J30, J31, J4, J5, J6, J7, J8, J9
598Schizosaccharomyces pombe (strain 972 / ATCC 24843)Mutation(s): 0 
Gene Names: nsp1
UniProt
Find proteins for Q10168 (Schizosaccharomyces pombe (strain 972 / ATCC 24843))
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Entity ID: 15
MoleculeChains Sequence LengthOrganismDetailsImage
Nup44
H, H1, H10, H11, H12
H, H1, H10, H11, H12, H13, H14, H15, H16, H17, H18, H19, H2, H20, H21, H22, H23, H24, H25, H26, H27, H28, H29, H3, H30, H31, H4, H5, H6, H7, H8, H9
403Schizosaccharomyces pombe (strain 972 / ATCC 24843)Mutation(s): 0 
Gene Names: nup44
UniProt
Find proteins for O42963 (Schizosaccharomyces pombe (strain 972 / ATCC 24843))
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Entity ID: 16
MoleculeChains Sequence LengthOrganismDetailsImage
Nup45
I, I1, I10, I11, I12
I, I1, I10, I11, I12, I13, I14, I15, I16, I17, I18, I19, I2, I20, I21, I22, I23, I24, I25, I26, I27, I28, I29, I3, I30, I31, I4, I5, I6, I7, I8, I9
425Schizosaccharomyces pombe (strain 972 / ATCC 24843)Mutation(s): 0 
Gene Names: nup45
UniProt
Find proteins for Q09793 (Schizosaccharomyces pombe (strain 972 / ATCC 24843))
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Experimental Data & Validation

Integrative Structure Snapshot

  • Multi-Scale: No 
  • Multi-State: No 
  • Ordered-State: No 
  • Deposited Models: 1 
  • Representative Model: 1 

Structure Validation

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Entry History 

Revision History  (Full details and data files)

  • Version 1.0: 2021-11-12
    Type: Initial release