9A3U | pdb_00009a3u

A representative atomistic model of the Populus Secondary Cell Wall


Integrative Structure Snapshot

  • Multi-Scale: No 
  • Multi-State: No 
  • Ordered-State: No 
  • Deposited Models: 1 
  • Representative Model: 1 

This is version 1.0 of the entry. See complete history


Literature

Atomistic, Macromolecular Model of the Populus Secondary Cell Wall Informed by Solid-State NMR

Addison, B.Bu, L.Bharadwaj, V.S.Crowley, M.F.Harman-Ware, A.E.Crowley, M.F.Bomble, Y.Ciesielski, P.N.

(2024) Sci Adv 30: 1545-1614


Macromolecules

Find similar nucleic acids by:  Sequence   |   3D Structure  

Entity ID: 1
MoleculeChains LengthOrganismImage
Lignin
A [auth L10],
AA [auth L27q],
AB [auth L53Q],
AC [auth L79k],
AD [auth L105K],
B [auth L21],
BA [auth L28r],
BB [auth L54R],
BC [auth L80l],
BD [auth L106L],
C [auth L32],
CA [auth L29s],
CB [auth L55S],
CC [auth L81m],
CD [auth L107M],
D [auth L43],
DA [auth L30t],
DB [auth L56T],
DC [auth L82n],
DD [auth L108N],
E [auth L54],
EA [auth L31u],
EB [auth L57U],
EC [auth L83o],
ED [auth L109O],
F [auth L65],
FA [auth L32v],
FB [auth L58V],
FC [auth L84p],
FD [auth L110P],
G [auth L76],
GA [auth L33w],
GB [auth L590],
GC [auth L85q],
GD [auth L111Q],
H [auth L87],
HA [auth L34x],
HB [auth L601],
HC [auth L86r],
HD [auth L112R],
I [auth L98],
IA [auth L35y],
IB [auth L612],
IC [auth L87s],
ID [auth L113S],
J [auth L109],
JA [auth L36z],
JB [auth L623],
JC [auth L88t],
JD [auth L114T],
K [auth L11a],
KA [auth L37A],
KB [auth L634],
KC [auth L89u],
KD [auth L115U],
L [auth L12b],
LA [auth L38B],
LB [auth L645],
LC [auth L90v],
M [auth L13c],
MA [auth L39C],
MB [auth L656],
MC [auth L91w],
N [auth L14d],
NA [auth L40D],
NB [auth L667],
NC [auth L92x],
O [auth L15e],
OA [auth L41E],
OB [auth L678],
OC [auth L93y],
P [auth L16f],
PA [auth L42F],
PB [auth L689],
PC [auth L94z],
Q [auth L17g],
QA [auth L43G],
QB [auth L69a],
QC [auth L95A],
R [auth L18h],
RA [auth L44H],
RB [auth L70b],
RC [auth L96B],
S [auth L19i],
SA [auth L45I],
SB [auth L71c],
SC [auth L97C],
T [auth L20j],
TA [auth L46J],
TB [auth L72d],
TC [auth L98D],
U [auth L21k],
UA [auth L47K],
UB [auth L73e],
UC [auth L99E],
V [auth L22l],
VA [auth L48L],
VB [auth L74f],
VC [auth L100F],
W [auth L23m],
WA [auth L49M],
WB [auth L75g],
WC [auth L101G],
X [auth L24n],
XA [auth L50N],
XB [auth L76h],
XC [auth L102H],
Y [auth L25o],
YA [auth L51O],
YB [auth L77i],
YC [auth L103I],
Z [auth L26p],
ZA [auth L52P],
ZB [auth L78j],
ZC [auth L104J]
20N/A
Sequence Annotations
Expand
  • Reference Sequence
Oligosaccharides

Help

Entity ID: 2
MoleculeChains Length2D Diagram Glycosylation3D Interactions
Xylan-m2
BF [auth X43G],
CF [auth X44H],
DF [auth X45I],
EF [auth X46J],
FF [auth X47K],
BF [auth X43G],
CF [auth X44H],
DF [auth X45I],
EF [auth X46J],
FF [auth X47K],
GE [auth X1l],
HE [auth X2m],
IE [auth X3n],
JE [auth X4o],
KE [auth X5p],
LD [auth X220],
MD [auth X231],
ND [auth X242],
OD [auth X253],
PD [auth X264]
45N/AN/A
Entity ID: 3
MoleculeChains Length2D Diagram Glycosylation3D Interactions
Xylan-m4
GF [auth X48L],
HF [auth X49M],
IF [auth X50N],
JF [auth X51O],
KF [auth X52P],
GF [auth X48L],
HF [auth X49M],
IF [auth X50N],
JF [auth X51O],
KF [auth X52P],
LE [auth X6q],
ME [auth X7r],
NE [auth X8s],
OE [auth X9t],
PE [auth X10u],
QD [auth X275],
RD [auth X286],
SD [auth X297],
TD [auth X308],
UD [auth X319]
45N/AN/A
Entity ID: 4
MoleculeChains Length2D Diagram Glycosylation3D Interactions
Xylan-m6
LF [auth X53Q],
MF [auth X54R],
NF [auth X55S],
OF [auth X56T],
PF [auth X57U],
LF [auth X53Q],
MF [auth X54R],
NF [auth X55S],
OF [auth X56T],
PF [auth X57U],
QE [auth X11v],
RE [auth X12w],
SE [auth X13x],
TE [auth X14y],
UE [auth X15z],
VD [auth X32a],
WD [auth X33b],
XD [auth X34c],
YD [auth X35d],
ZD [auth X36e]
45N/AN/A
Entity ID: 5
MoleculeChains Length2D Diagram Glycosylation3D Interactions
Xylan-m8
AE [auth X37f],
AF [auth X21F],
BE [auth X38g],
CE [auth X39h],
DE [auth X40i],
AE [auth X37f],
AF [auth X21F],
BE [auth X38g],
CE [auth X39h],
DE [auth X40i],
EE [auth X41j],
FE [auth X42k],
QF [auth X58V],
RF [auth X59W],
SF [auth X60X],
VE [auth X16A],
WE [auth X17B],
XE [auth X18C],
YE [auth X19D],
ZE [auth X20E]
45N/AN/A
Entity ID: 6
MoleculeChains Length2D Diagram Glycosylation3D Interactions
Cellulose
AG [auth CEL17],
AH [auth CEL2x],
AI [auth CEL4n],
AJ [auth CEL5d],
AK [auth CEL73],
AG [auth CEL17],
AH [auth CEL2x],
AI [auth CEL4n],
AJ [auth CEL5d],
AK [auth CEL73],
AL [auth CEL8t],
BG [auth CEL18],
BH [auth CEL2y],
BI [auth CEL4o],
BJ [auth CEL5e],
BK [auth CEL74],
BL [auth CEL8u],
CG [auth CEL19],
CH [auth CEL2z],
CI [auth CEL4p],
CJ [auth CEL5f],
CK [auth CEL75],
CL [auth CEL8v],
DG [auth CEL1a],
DH [auth CEL30],
DI [auth CEL4q],
DJ [auth CEL5g],
DK [auth CEL76],
DL [auth CEL8w],
EG [auth CEL1b],
EH [auth CEL31],
EI [auth CEL4r],
EJ [auth CEL5h],
EK [auth CEL77],
EL [auth CEL8x],
FG [auth CEL1c],
FH [auth CEL32],
FI [auth CEL4s],
FJ [auth CEL6i],
FK [auth CEL78],
FL [auth CEL8y],
GG [auth CEL1d],
GH [auth CEL33],
GI [auth CEL4t],
GJ [auth CEL6j],
GK [auth CEL79],
GL [auth CEL8z],
HG [auth CEL1e],
HH [auth CEL34],
HI [auth CEL4u],
HJ [auth CEL6k],
HK [auth CEL7a],
IG [auth CEL1f],
IH [auth CEL35],
II [auth CEL4v],
IJ [auth CEL6l],
IK [auth CEL7b],
JG [auth CEL1g],
JH [auth CEL36],
JI [auth CEL4w],
JJ [auth CEL6m],
JK [auth CEL7c],
KG [auth CEL1h],
KH [auth CEL37],
KI [auth CEL4x],
KJ [auth CEL6n],
KK [auth CEL7d],
LG [auth CEL2i],
LH [auth CEL38],
LI [auth CEL4y],
LJ [auth CEL6o],
LK [auth CEL7e],
MG [auth CEL2j],
MH [auth CEL39],
MI [auth CEL4z],
MJ [auth CEL6p],
MK [auth CEL7f],
NG [auth CEL2k],
NH [auth CEL3a],
NI [auth CEL50],
NJ [auth CEL6q],
NK [auth CEL7g],
OG [auth CEL2l],
OH [auth CEL3b],
OI [auth CEL51],
OJ [auth CEL6r],
OK [auth CEL7h],
PG [auth CEL2m],
PH [auth CEL3c],
PI [auth CEL52],
PJ [auth CEL6s],
PK [auth CEL8i],
QG [auth CEL2n],
QH [auth CEL3d],
QI [auth CEL53],
QJ [auth CEL6t],
QK [auth CEL8j],
RG [auth CEL2o],
RH [auth CEL3e],
RI [auth CEL54],
RJ [auth CEL6u],
RK [auth CEL8k],
SG [auth CEL2p],
SH [auth CEL3f],
SI [auth CEL55],
SJ [auth CEL6v],
SK [auth CEL8l],
TF [auth CEL10],
TG [auth CEL2q],
TH [auth CEL3g],
TI [auth CEL56],
TJ [auth CEL6w],
TK [auth CEL8m],
UF [auth CEL11],
UG [auth CEL2r],
UH [auth CEL3h],
UI [auth CEL57],
UJ [auth CEL6x],
UK [auth CEL8n],
VF [auth CEL12],
VG [auth CEL2s],
VH [auth CEL4i],
VI [auth CEL58],
VJ [auth CEL6y],
VK [auth CEL8o],
WF [auth CEL13],
WG [auth CEL2t],
WH [auth CEL4j],
WI [auth CEL59],
WJ [auth CEL6z],
WK [auth CEL8p],
XF [auth CEL14],
XG [auth CEL2u],
XH [auth CEL4k],
XI [auth CEL5a],
XJ [auth CEL70],
XK [auth CEL8q],
YF [auth CEL15],
YG [auth CEL2v],
YH [auth CEL4l],
YI [auth CEL5b],
YJ [auth CEL71],
YK [auth CEL8r],
ZF [auth CEL16],
ZG [auth CEL2w],
ZH [auth CEL4m],
ZI [auth CEL5c],
ZJ [auth CEL72],
ZK [auth CEL8s]
40N/AN/A
Small Molecules
Ligands 1 Unique
IDChains Name / Formula / InChI Key2D Diagram3D Interactions
NA
Query on NA

Download Ideal Coordinates CCD File 
AM [auth L13c]
AN [auth L24n]
AO [auth L30t]
AP [auth L40D]
AQ [auth L47K]
AM [auth L13c],
AN [auth L24n],
AO [auth L30t],
AP [auth L40D],
AQ [auth L47K],
AR [auth L57U],
AS [auth L73e],
AT [auth L77i],
AU [auth L84p],
AV [auth L93y],
AW [auth L111Q],
BM [auth L13c],
BN [auth L25o],
BO [auth L31u],
BP [auth L40D],
BQ [auth L47K],
BR [auth L57U],
BS [auth L73e],
BT [auth L77i],
BU [auth L84p],
BV [auth L95A],
BW [auth L111Q],
CM [auth L14d],
CN [auth L25o],
CO [auth L33w],
CP [auth L40D],
CQ [auth L47K],
CR [auth L57U],
CS [auth L73e],
CT [auth L77i],
CU [auth L84p],
CV [auth L95A],
CW [auth L111Q],
DM [auth L14d],
DN [auth L25o],
DO [auth L33w],
DP [auth L40D],
DQ [auth L48L],
DR [auth L57U],
DS [auth L73e],
DT [auth L77i],
DU [auth L84p],
DV [auth L95A],
DW [auth L111Q],
EM [auth L14d],
EN [auth L25o],
EO [auth L33w],
EP [auth L40D],
EQ [auth L49M],
ER [auth L57U],
ES [auth L73e],
ET [auth L77i],
EU [auth L84p],
EV [auth L95A],
EW [auth L111Q],
FM [auth L14d],
FN [auth L25o],
FO [auth L35y],
FP [auth L40D],
FQ [auth L49M],
FR [auth L57U],
FS [auth L73e],
FT [auth L77i],
FU [auth L84p],
FV [auth L96B],
FW [auth L111Q],
GM [auth L14d],
GN [auth L25o],
GO [auth L35y],
GP [auth L40D],
GQ [auth L49M],
GR [auth L590],
GS [auth L73e],
GT [auth L77i],
GU [auth L84p],
GV [auth L96B],
GW [auth L111Q],
HL [auth L54],
HM [auth L15e],
HN [auth L25o],
HO [auth L35y],
HP [auth L40D],
HQ [auth L50N],
HR [auth L601],
HS [auth L73e],
HT [auth L77i],
HU [auth L84p],
HV [auth L96B],
HW [auth L111Q],
IL [auth L76],
IM [auth L16f],
IN [auth L25o],
IO [auth L35y],
IP [auth L40D],
IQ [auth L50N],
IR [auth L601],
IS [auth L73e],
IT [auth L77i],
IU [auth L84p],
IV [auth L96B],
IW [auth L111Q],
JL [auth L76],
JM [auth L16f],
JN [auth L25o],
JO [auth L36z],
JP [auth L40D],
JQ [auth L50N],
JR [auth L601],
JS [auth L73e],
JT [auth L77i],
JU [auth L84p],
JV [auth L96B],
JW [auth L111Q],
KL [auth L76],
KM [auth L16f],
KN [auth L25o],
KO [auth L36z],
KP [auth L40D],
KQ [auth L50N],
KR [auth L601],
KS [auth L73e],
KT [auth L77i],
KU [auth L84p],
KV [auth L98D],
KW [auth L111Q],
LL [auth L76],
LM [auth L16f],
LN [auth L25o],
LO [auth L36z],
LP [auth L40D],
LQ [auth L52P],
LR [auth L601],
LS [auth L73e],
LT [auth L77i],
LU [auth L85q],
LV [auth L99E],
LW [auth L111Q],
ML [auth L76],
MM [auth L16f],
MN [auth L27q],
MO [auth L37A],
MP [auth L41E],
MQ [auth L55S],
MR [auth L612],
MS [auth L73e],
MT [auth L77i],
MU [auth L85q],
MV [auth L99E],
MW [auth L111Q],
NL [auth L76],
NM [auth L16f],
NN [auth L27q],
NO [auth L37A],
NP [auth L41E],
NQ [auth L55S],
NR [auth L634],
NS [auth L73e],
NT [auth L78j],
NU [auth L86r],
NV [auth L100F],
NW [auth L111Q],
OL [auth L76],
OM [auth L18h],
ON [auth L27q],
OO [auth L37A],
OP [auth L42F],
OQ [auth L55S],
OR [auth L645],
OS [auth L73e],
OT [auth L79k],
OU [auth L91w],
OV [auth L100F],
OW [auth L111Q],
PL [auth L76],
PM [auth L18h],
PN [auth L27q],
PO [auth L37A],
PP [auth L43G],
PQ [auth L55S],
PR [auth L645],
PS [auth L73e],
PT [auth L80l],
PU [auth L91w],
PV [auth L100F],
PW [auth L111Q],
QL [auth L87],
QM [auth L18h],
QN [auth L27q],
QO [auth L37A],
QP [auth L45I],
QQ [auth L55S],
QR [auth L645],
QS [auth L73e],
QT [auth L80l],
QU [auth L91w],
QV [auth L100F],
QW [auth L111Q],
RL [auth L87],
RM [auth L18h],
RN [auth L27q],
RO [auth L37A],
RP [auth L46J],
RQ [auth L55S],
RR [auth L645],
RS [auth L73e],
RT [auth L81m],
RU [auth L91w],
RV [auth L100F],
RW [auth L111Q],
SL [auth L87],
SM [auth L19i],
SN [auth L27q],
SO [auth L38B],
SP [auth L46J],
SQ [auth L55S],
SR [auth L645],
SS [auth L73e],
ST [auth L82n],
SU [auth L91w],
SV [auth L100F],
SW [auth L111Q],
TL [auth L87],
TM [auth L21k],
TN [auth L27q],
TO [auth L38B],
TP [auth L47K],
TQ [auth L55S],
TR [auth L645],
TS [auth L73e],
TT [auth L83o],
TU [auth L92x],
TV [auth L102H],
TW [auth L114T],
UL [auth L87],
UM [auth L22l],
UN [auth L28r],
UO [auth L38B],
UP [auth L47K],
UQ [auth L55S],
UR [auth L645],
US [auth L74f],
UT [auth L84p],
UU [auth L92x],
UV [auth L104J],
UW [auth L114T],
VL [auth L98],
VM [auth L23m],
VN [auth L29s],
VO [auth L38B],
VP [auth L47K],
VQ [auth L56T],
VR [auth L667],
VS [auth L76h],
VT [auth L84p],
VU [auth L92x],
VV [auth L105K],
WL [auth L98],
WM [auth L24n],
WN [auth L29s],
WO [auth L38B],
WP [auth L47K],
WQ [auth L56T],
WR [auth L69a],
WS [auth L76h],
WT [auth L84p],
WU [auth L92x],
WV [auth L105K],
XL [auth L98],
XM [auth L24n],
XN [auth L29s],
XO [auth L38B],
XP [auth L47K],
XQ [auth L56T],
XR [auth L69a],
XS [auth L76h],
XT [auth L84p],
XU [auth L92x],
XV [auth L106L],
YL [auth L12b],
YM [auth L24n],
YN [auth L29s],
YO [auth L38B],
YP [auth L47K],
YQ [auth L57U],
YR [auth L69a],
YS [auth L77i],
YT [auth L84p],
YU [auth L92x],
YV [auth L107M],
ZL [auth L12b],
ZM [auth L24n],
ZN [auth L30t],
ZO [auth L38B],
ZP [auth L47K],
ZQ [auth L57U],
ZR [auth L70b],
ZS [auth L77i],
ZT [auth L84p],
ZU [auth L92x],
ZV [auth L111Q]
SODIUM ION
Na
FKNQFGJONOIPTF-UHFFFAOYSA-N
Experimental Data & Validation

Integrative Structure Snapshot

  • Multi-Scale: No 
  • Multi-State: No 
  • Ordered-State: No 
  • Deposited Models: 1 
  • Representative Model: 1 

Structure Validation

View Full Validation Report

View Summary Validation Report



Entry History 

Deposition Data

Revision History  (Full details and data files)

  • Version 1.0: 2024-01-05
    Type: Initial release