9A3W | pdb_00009a3w

Structure of the phage immune evasion protein Gad1 bound to the Gabija GajAB complex

Integrative structure models are generated using different types of input information, including varied experimental data, physical principles, statistical preferences, and other prior information.

• PDB DOI: https://doi.org/10.2210/pdb9A3W/pdb

• Organism(s): Bacillus cereus (strain VD045), Bacillus phage phi3T
• Mutation(s): No 


• Deposited: 2023-10-26 Released: 2024-01-05 
• Deposition Author(s): Antine, S.P., Johnson, A.G., Mooney, S.E., Mayer, M.L., Kranzusch, P.J.

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Integrative Structure Snapshot

• Multi-Scale: No 
• Multi-State: No 
• Ordered-State: No 
• Deposited Models: 1 
• Representative Model: 1 

Literature

Structural basis of Gabija anti-phage defence and viral immune evasion

Antine, S.P., Johnson, A.G., Mooney, S.E., Leavitt, A., Mayer, M.L., Yirmyia, E., Amitai, G., Sorek, R., Kranzusch, P.J.

(2023) Nature 

• DOI: https://doi.org/10.1038/s41586-023-06855-2

Assembly  

Global Symmetry: Dihedral - D2  (Explore in 3D)
Global Stoichiometry: Hetero 16-mer - A8B4C4 Pseudo Symmetry: Dihedral - D2  (Explore in 3D)
Pseudo Stoichiometry: Hetero 16-mer - A4B4C4D4 

Macromolecule Content 

• Total Structure Weight: 920.81 kDa 
• Atom Count: 55,300 
• Modeled Residue Count: 6,836 
• Deposited Residue Count: 6,836 
• Unique protein chains: 3

Macromolecules

Entity ID: 1
Molecule	Chains	Sequence Length	Organism	Details	Image
Gabija protein GajA	A, B, C, D	626	Bacillus cereus (strain VD045)	Mutation(s): 0  Gene Names: gajA EC: 3.1
UniProt
Find proteins for J8H9C1 (Bacillus cereus (strain VD045)) Explore J8H9C1  Go to UniProtKB:  J8H9C1

Entity ID: 2
Molecule	Chains	Sequence Length	Organism	Details	Image
Gabija protein GajB	E, F, G, H	493	Bacillus cereus (strain VD045)	Mutation(s): 0  Gene Names: gajB
UniProt
Find proteins for J8HQ06 (Bacillus cereus (strain VD045)) Explore J8HQ06  Go to UniProtKB:  J8HQ06

Entity ID: 3
Molecule	Chains	Sequence Length	Organism	Details	Image
Gabija anti-defense 1	I, J, K, L, M, N, O, P	295	Bacillus phage phi3T	Mutation(s): 0  Gene Names: gad1
UniProt
Find proteins for A0A1P8CWZ3 (Bacillus phage phi3T) Explore A0A1P8CWZ3  Go to UniProtKB:  A0A1P8CWZ3

Experimental Data & Validation

Integrative Structure Snapshot

• Multi-Scale: No 
• Multi-State: No 
• Ordered-State: No 
• Deposited Models: 1 
• Representative Model: 1 

Structure Validation

View Full Validation Report

View Summary Validation Report

Entry History 

Deposition Data

• Released Date: 2024-01-05 
Deposition Author(s): Antine, S.P., Johnson, A.G., Mooney, S.E., Mayer, M.L., Kranzusch, P.J.

Revision History  

• Version 1.0: 2024-01-05
  Type: Initial release