9EYS | pdb_00009eys

Structure of Far-Red Photosystem I from C. thermalis PCC 7203


Experimental Data Snapshot

  • Method: ELECTRON MICROSCOPY
  • Resolution: 2.01 Å
  • Aggregation State: PARTICLE 
  • Reconstruction Method: SINGLE PARTICLE 

wwPDB Validation   3D Report Full Report


This is version 1.0 of the entry. See complete history


Literature

Structure of Far-Red Photosystem I from C. thermalis PCC 7203

Consoli, G.Tufail, F.Leong, H.Fantuzzi, A.Rutherford, A.W.

To be published.

Macromolecules
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Entity ID: 1
MoleculeChains Sequence LengthOrganismDetailsImage
Photosystem I P700 chlorophyll a apoprotein A1A,
M [auth N],
Y [auth a]
782Chroococcidiopsis thermalis PCC 7203Mutation(s): 0 
EC: 1.97.1.12
UniProt
Find proteins for K9TWJ0 (Chroococcidiopsis thermalis (strain PCC 7203))
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Entity ID: 2
MoleculeChains Sequence LengthOrganismDetailsImage
Photosystem I P700 chlorophyll a apoprotein A2B,
N [auth O],
Z [auth b]
740Chroococcidiopsis thermalis PCC 7203Mutation(s): 0 
EC: 1.97.1.12
UniProt
Find proteins for K9TVF3 (Chroococcidiopsis thermalis (strain PCC 7203))
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Entity ID: 3
MoleculeChains Sequence LengthOrganismDetailsImage
Photosystem I iron-sulfur centerAA [auth c],
C,
O [auth P]
81Chroococcidiopsis thermalis PCC 7203Mutation(s): 0 
EC: 1.97.1.12
UniProt
Find proteins for K9TVB5 (Chroococcidiopsis thermalis (strain PCC 7203))
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Entity ID: 4
MoleculeChains Sequence LengthOrganismDetailsImage
Photosystem I reaction center subunit IIBA [auth d],
D,
P [auth Q]
142Chroococcidiopsis thermalis PCC 7203Mutation(s): 0 
Gene Names: Chro_4755
UniProt
Find proteins for K9U6S7 (Chroococcidiopsis thermalis (strain PCC 7203))
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Entity ID: 5
MoleculeChains Sequence LengthOrganismDetailsImage
Photosystem I reaction center subunit IVCA [auth e],
E,
Q [auth R]
66Chroococcidiopsis thermalis PCC 7203Mutation(s): 0 
UniProt
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Entity ID: 6
MoleculeChains Sequence LengthOrganismDetailsImage
Photosystem I reaction center subunit IIIDA [auth f],
F,
R [auth S]
161Chroococcidiopsis thermalis PCC 7203Mutation(s): 0 
UniProt
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Entity ID: 7
MoleculeChains Sequence LengthOrganismDetailsImage
Photosystem I reaction center subunit VIIIEA [auth g],
G [auth I],
S [auth T]
51Chroococcidiopsis thermalis PCC 7203Mutation(s): 0 
Gene Names: Chro_1016
UniProt
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Entity ID: 8
MoleculeChains Sequence LengthOrganismDetailsImage
Photosystem I reaction center subunit IXFA [auth h],
H [auth J],
T [auth U]
46Chroococcidiopsis thermalis PCC 7203Mutation(s): 0 
UniProt
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Entity ID: 9
MoleculeChains Sequence LengthOrganismDetailsImage
Photosystem I reaction center subunit PsaKGA [auth i],
I [auth K],
U [auth V]
80Chroococcidiopsis thermalis PCC 7203Mutation(s): 0 
UniProt
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Entity ID: 10
MoleculeChains Sequence LengthOrganismDetailsImage
Photosystem I reaction center subunit XIHA [auth j],
J [auth L],
V [auth W]
183Chroococcidiopsis thermalis PCC 7203Mutation(s): 0 
UniProt
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Entity ID: 11
MoleculeChains Sequence LengthOrganismDetailsImage
Photosystem I reaction center subunit XIIIA [auth k],
K [auth M],
W [auth Y]
32Chroococcidiopsis thermalis PCC 7203Mutation(s): 0 
Gene Names: psaMChro_0108
UniProt
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Entity ID: 12
MoleculeChains Sequence LengthOrganismDetailsImage
Photosystem one PsaXJA [auth l],
L [auth X],
X [auth Z]
29Chroococcidiopsis thermalis PCC 7203Mutation(s): 0 
Gene Names: Chro_0654
UniProt
Find proteins for K9TUG4 (Chroococcidiopsis thermalis (strain PCC 7203))
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Small Molecules
Ligands 11 Unique
IDChains Name / Formula / InChI Key2D Diagram3D Interactions
F6C (Subject of Investigation/LOI)
Query on F6C

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BE [auth B]
CF [auth L]
CI [auth O]
DO [auth b]
GJ [auth O]
BE [auth B],
CF [auth L],
CI [auth O],
DO [auth b],
GJ [auth O],
GK [auth W],
GN [auth b],
HB [auth A],
JB [auth A],
KO [auth b],
LA [auth A],
LG [auth N],
LP [auth j],
NG [auth N],
OC [auth A],
PF [auth N],
PL [auth a],
RH [auth N],
RL [auth a],
TK [auth a],
UD [auth B],
VM [auth a],
ZE [auth L],
ZI [auth O]
Chlorophyll F
C55 H68 Mg N4 O6
YUTLCKLMRUVWDE-FOFJUSMOSA-M
CLA (Subject of Investigation/LOI)
Query on CLA

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AB [auth A]
AD [auth B]
AE [auth B]
AF [auth L]
AG [auth N]
AB [auth A],
AD [auth B],
AE [auth B],
AF [auth L],
AG [auth N],
AH [auth N],
AI [auth O],
AJ [auth O],
AL [auth a],
AM [auth a],
AN [auth b],
AO [auth b],
BB [auth A],
BD [auth B],
BF [auth L],
BG [auth N],
BH [auth N],
BI [auth O],
BJ [auth O],
BL [auth a],
BM [auth a],
BN [auth b],
BO [auth b],
CB [auth A],
CD [auth B],
CE [auth B],
CG [auth N],
CH [auth N],
CJ [auth O],
CK [auth V],
CL [auth a],
CM [auth a],
CN [auth b],
CO [auth b],
DB [auth A],
DD [auth B],
DG [auth N],
DH [auth N],
DI [auth O],
DJ [auth O],
DK [auth V],
DL [auth a],
DM [auth a],
DN [auth b],
EB [auth A],
ED [auth B],
EG [auth N],
EI [auth O],
EJ [auth O],
EK [auth W],
EL [auth a],
EM [auth a],
EN [auth b],
EO [auth b],
FB [auth A],
FD [auth B],
FG [auth N],
FI [auth O],
FJ [auth O],
FK [auth W],
FL [auth a],
FM [auth a],
FN [auth b],
FO [auth b],
GB [auth A],
GD [auth B],
GG [auth N],
GI [auth O],
GL [auth a],
GM [auth a],
GO [auth b],
GP [auth i],
HD [auth B],
HG [auth N],
HI [auth O],
HJ [auth O],
HL [auth a],
HM [auth a],
HN [auth b],
HO [auth b],
HP [auth i],
IB [auth A],
ID [auth B],
IG [auth N],
II [auth O],
IL [auth a],
IN [auth b],
IO [auth b],
JD [auth B],
JG [auth N],
JI [auth O],
JL [auth a],
JN [auth b],
JO [auth b],
JP [auth j],
KB [auth A],
KD [auth B],
KG [auth N],
KI [auth O],
KL [auth a],
KN [auth b],
KP [auth j],
LB [auth A],
LD [auth B],
LI [auth O],
LL [auth a],
LN [auth b],
LO [auth b],
MA [auth A],
MB [auth A],
MD [auth B],
MG [auth N],
MI [auth O],
ML [auth a],
MN [auth b],
NA [auth A],
NB [auth A],
NC [auth A],
ND [auth B],
NF [auth X],
NI [auth O],
NL [auth a],
NN [auth b],
OA [auth A],
OB [auth A],
OD [auth B],
OE [auth F],
OG [auth N],
OI [auth O],
OL [auth a],
ON [auth b],
PA [auth A],
PB [auth A],
PD [auth B],
PG [auth N],
PI [auth O],
PN [auth b],
QA [auth A],
QB [auth A],
QC [auth B],
QD [auth B],
QF [auth N],
QG [auth N],
QI [auth O],
QL [auth a],
QN [auth b],
RA [auth A],
RB [auth A],
RC [auth B],
RD [auth B],
RF [auth N],
RG [auth N],
RI [auth O],
RK [auth Z],
RN [auth b],
SA [auth A],
SB [auth A],
SC [auth B],
SD [auth B],
SF [auth N],
SG [auth N],
SI [auth O],
SL [auth a],
SN [auth b],
TA [auth A],
TB [auth A],
TC [auth B],
TD [auth B],
TF [auth N],
TG [auth N],
TH [auth O],
TI [auth O],
TL [auth a],
TN [auth b],
UA [auth A],
UB [auth A],
UC [auth B],
UF [auth N],
UG [auth N],
UH [auth O],
UI [auth O],
UJ [auth S],
UK [auth a],
UL [auth a],
UN [auth b],
VA [auth A],
VB [auth A],
VC [auth B],
VD [auth B],
VF [auth N],
VG [auth N],
VH [auth O],
VI [auth O],
VK [auth a],
VL [auth a],
VN [auth b],
VP [auth l],
WA [auth A],
WB [auth A],
WC [auth B],
WD [auth B],
WF [auth N],
WG [auth N],
WH [auth O],
WI [auth O],
WK [auth a],
WL [auth a],
WN [auth b],
WO [auth f],
XA [auth A],
XB [auth A],
XC [auth B],
XD [auth B],
XE [auth K],
XF [auth N],
XG [auth N],
XH [auth O],
XI [auth O],
XK [auth a],
XL [auth a],
XM [auth b],
XN [auth b],
YA [auth A],
YB [auth A],
YC [auth B],
YD [auth B],
YE [auth K],
YF [auth N],
YG [auth N],
YH [auth O],
YI [auth O],
YK [auth a],
YL [auth a],
YM [auth b],
YN [auth b],
ZA [auth A],
ZB [auth A],
ZC [auth B],
ZD [auth B],
ZF [auth N],
ZG [auth N],
ZH [auth O],
ZK [auth a],
ZL [auth a],
ZM [auth b],
ZN [auth b]
CHLOROPHYLL A
C55 H72 Mg N4 O5
ATNHDLDRLWWWCB-AENOIHSZSA-M
CL0 (Subject of Investigation/LOI)
Query on CL0

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KA [auth A],
OF [auth N],
SK [auth a]
CHLOROPHYLL A ISOMER
C55 H72 Mg N4 O5
VIQFHHZSLDFWDU-DVXFRRMCSA-M
LMG
Query on LMG

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AK [auth U]
CP [auth g]
EF [auth L]
EP [auth h]
IK [auth W]
AK [auth U],
CP [auth g],
EF [auth L],
EP [auth h],
IK [auth W],
KE [auth B],
MC [auth A],
NP [auth j],
QH [auth N],
QJ [auth O],
TE [auth I],
TO [auth b],
UM [auth a],
VE [auth J],
YJ [auth T]
1,2-DISTEAROYL-MONOGALACTOSYL-DIGLYCERIDE
C45 H86 O10
DCLTVZLYPPIIID-CVELTQQQSA-N
LHG
Query on LHG

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FF [auth L]
IC [auth A]
JK [auth W]
KF [auth M]
LF [auth X]
FF [auth L],
IC [auth A],
JK [auth W],
KF [auth M],
LF [auth X],
MF [auth X],
MH [auth N],
NK [auth Y],
OP [auth j],
PK [auth Z],
QK [auth Z],
QM [auth a],
RP [auth k],
TP [auth l],
UP [auth l]
1,2-DIPALMITOYL-PHOSPHATIDYL-GLYCEROLE
C38 H75 O10 P
BIABMEZBCHDPBV-MPQUPPDSSA-N
BCR
Query on BCR

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AP [auth g]
BK [auth V]
BP [auth g]
CC [auth A]
DC [auth A]
AP [auth g],
BK [auth V],
BP [auth g],
CC [auth A],
DC [auth A],
DF [auth L],
DP [auth h],
EC [auth A],
EE [auth B],
FC [auth A],
FE [auth B],
FP [auth i],
GC [auth A],
GE [auth B],
GH [auth N],
HC [auth A],
HE [auth B],
HF [auth L],
HH [auth N],
HK [auth W],
IE [auth B],
IH [auth N],
IP [auth j],
JE [auth B],
JF [auth M],
JH [auth N],
JJ [auth O],
KH [auth N],
KJ [auth O],
KM [auth a],
LH [auth N],
LJ [auth O],
LK [auth W],
LM [auth a],
MJ [auth O],
MM [auth a],
MP [auth j],
NJ [auth O],
NM [auth a],
NO [auth b],
OJ [auth O],
OK [auth Y],
OM [auth a],
OO [auth b],
PC [auth A],
PE [auth F],
PJ [auth O],
PM [auth a],
PO [auth b],
QE [auth F],
QO [auth b],
RE [auth I],
RO [auth b],
SE [auth I],
SH [auth N],
SO [auth b],
SP [auth k],
UE [auth J],
VJ [auth S],
WE [auth K],
WJ [auth T],
WM [auth a],
XJ [auth T],
XO [auth f],
YO [auth f],
ZJ [auth U]
BETA-CAROTENE
C40 H56
OENHQHLEOONYIE-JLTXGRSLSA-N
LMT
Query on LMT

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JC [auth A]
KC [auth A]
LC [auth A]
NH [auth N]
OH [auth N]
JC [auth A],
KC [auth A],
LC [auth A],
NH [auth N],
OH [auth N],
PH [auth N],
RM [auth a],
SM [auth a],
TM [auth a]
DODECYL-BETA-D-MALTOSIDE
C24 H46 O11
NLEBIOOXCVAHBD-QKMCSOCLSA-N
PQN
Query on PQN

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AC [auth A]
DE [auth B]
EH [auth N]
IJ [auth O]
IM [auth a]
AC [auth A],
DE [auth B],
EH [auth N],
IJ [auth O],
IM [auth a],
MO [auth b]
PHYLLOQUINONE
C31 H46 O2
MBWXNTAXLNYFJB-NKFFZRIASA-N
SF4
Query on SF4

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BC [auth A]
FH [auth N]
JM [auth a]
ME [auth C]
NE [auth C]
BC [auth A],
FH [auth N],
JM [auth a],
ME [auth C],
NE [auth C],
SJ [auth P],
TJ [auth P],
UO [auth c],
VO [auth c]
IRON/SULFUR CLUSTER
Fe4 S4
LJBDFODJNLIPKO-UHFFFAOYSA-N
LFA
Query on LFA

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GF [auth L]
KK [auth W]
LE [auth B]
PP [auth j]
RJ [auth O]
GF [auth L],
KK [auth W],
LE [auth B],
PP [auth j],
RJ [auth O],
ZO [auth f]
EICOSANE
C20 H42
CBFCDTFDPHXCNY-UHFFFAOYSA-N
CA
Query on CA

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IF [auth L],
MK [auth W],
QP [auth j]
CALCIUM ION
Ca
BHPQYMZQTOCNFJ-UHFFFAOYSA-N
Experimental Data & Validation

Experimental Data

  • Method: ELECTRON MICROSCOPY
  • Resolution: 2.01 Å
  • Aggregation State: PARTICLE 
  • Reconstruction Method: SINGLE PARTICLE 
EM Software:
TaskSoftware PackageVersion
MODEL REFINEMENTPHENIX1.21.2_5419

Structure Validation

View Full Validation Report



Entry History & Funding Information

Deposition Data


Funding OrganizationLocationGrant Number
Biotechnology and Biological Sciences Research Council (BBSRC)United KingdomBB/V002015/1
Biotechnology and Biological Sciences Research Council (BBSRC)United KingdomBB/R001383/1
Biotechnology and Biological Sciences Research Council (BBSRC)United KingdomBB/R00921X
Leverhulme TrustUnited KingdomRPG-2022-203

Revision History  (Full details and data files)

  • Version 1.0: 2025-04-23
    Type: Initial release