9GU3 | pdb_00009gu3

Human adult muscle nAChR in desensitised state in nanodisc with 1 mM acetylcholine


Experimental Data Snapshot

  • Method: ELECTRON MICROSCOPY
  • Resolution: 2.64 Å
  • Aggregation State: PARTICLE 
  • Reconstruction Method: SINGLE PARTICLE 

Starting Models: in silico
View more details

wwPDB Validation   3D Report Full Report


This is version 1.0 of the entry. See complete history


Literature

Structures of the human adult muscle-type nicotinic receptor in resting and desensitized states.

Li, A.Pike, A.C.W.Webster, R.Maxwell, S.Liu, W.W.Chi, G.Palace, J.Beeson, D.Sauer, D.B.Dong, Y.Y.

(2025) Cell Rep 44: 115581-115581

  • DOI: https://doi.org/10.1016/j.celrep.2025.115581
  • Primary Citation of Related Structures:  
    9GU0, 9GU1, 9GU2, 9GU3

  • PubMed Abstract: 

    Muscle-type nicotinic acetylcholine receptor (AChR) is the key signaling molecule in neuromuscular junctions. Here, we present the structures of full-length human adult receptors in complex with Fab35 in α-bungarotoxin (αBuTx)-bound resting states and ACh-bound desensitized states. In addition to identifying the conformational changes during recovery from desensitization, we also used electrophysiology to probe the effects of eight previously unstudied AChR genetic variants found in patients with congenital myasthenic syndrome (CMS), revealing they cause either slow- or fast-channel CMS characterized by prolonged or abbreviated ion channel bursts. The combined kinetic and structural data offer a better understanding of both the AChR state transition and the pathogenic mechanisms of disease variants.


  • Organizational Affiliation

    Nuffield Department of Clinical Neurosciences, University of Oxford, OX3 9DS Oxford, UK; Centre for Medicines Discovery, Nuffield Department of Medicine, University of Oxford, OX3 7FZ Oxford, UK. Electronic address: anna.li@ndcn.ox.ac.uk.


Macromolecules
Find similar proteins by:  (by identity cutoff)  |  3D Structure
Entity ID: 1
MoleculeChains Sequence LengthOrganismDetailsImage
Acetylcholine receptor subunit alphaA,
E [auth L]
437Homo sapiensMutation(s): 0 
Gene Names: CHRNA1ACHRACHNRA
Membrane Entity: Yes 
UniProt & NIH Common Fund Data Resources
Find proteins for P02708 (Homo sapiens)
Explore P02708 
Go to UniProtKB:  P02708
PHAROS:  P02708
GTEx:  ENSG00000138435 
Entity Groups  
Sequence Clusters30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt GroupP02708
Glycosylation
Glycosylation Sites: 1Go to GlyGen: P02708-2
Sequence Annotations
Expand
  • Reference Sequence
Find similar proteins by:  (by identity cutoff)  |  3D Structure
Entity ID: 2
MoleculeChains Sequence LengthOrganismDetailsImage
Acetylcholine receptor subunit beta478Homo sapiensMutation(s): 0 
Gene Names: CHRNB1ACHRBCHRNB
Membrane Entity: Yes 
UniProt & NIH Common Fund Data Resources
Find proteins for P11230 (Homo sapiens)
Explore P11230 
Go to UniProtKB:  P11230
PHAROS:  P11230
GTEx:  ENSG00000170175 
Entity Groups  
Sequence Clusters30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt GroupP11230
Glycosylation
Glycosylation Sites: 1Go to GlyGen: P11230-1
Sequence Annotations
Expand
  • Reference Sequence
Find similar proteins by:  (by identity cutoff)  |  3D Structure
Entity ID: 3
MoleculeChains Sequence LengthOrganismDetailsImage
Acetylcholine receptor subunit deltaC [auth D]496Homo sapiensMutation(s): 0 
Gene Names: CHRNDACHRD
Membrane Entity: Yes 
UniProt & NIH Common Fund Data Resources
Find proteins for Q07001 (Homo sapiens)
Explore Q07001 
Go to UniProtKB:  Q07001
PHAROS:  Q07001
GTEx:  ENSG00000135902 
Entity Groups  
Sequence Clusters30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt GroupQ07001
Glycosylation
Glycosylation Sites: 2Go to GlyGen: Q07001-1
Sequence Annotations
Expand
  • Reference Sequence
Find similar proteins by:  (by identity cutoff)  |  3D Structure
Entity ID: 4
MoleculeChains Sequence LengthOrganismDetailsImage
Acetylcholine receptor subunit epsilon,Green fluorescent proteinD [auth E]721Homo sapiensAequorea victoriaMutation(s): 0 
Gene Names: CHRNEACHREGFP
Membrane Entity: Yes 
UniProt & NIH Common Fund Data Resources
Find proteins for Q04844 (Homo sapiens)
Explore Q04844 
Go to UniProtKB:  Q04844
PHAROS:  Q04844
GTEx:  ENSG00000108556 
Entity Groups  
Sequence Clusters30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt GroupQ04844
Glycosylation
Glycosylation Sites: 2Go to GlyGen: Q04844-1
Sequence Annotations
Expand
  • Reference Sequence
Find similar proteins by:  (by identity cutoff)  |  3D Structure
Entity ID: 5
MoleculeChains Sequence LengthOrganismDetailsImage
Fab35 light chainF [auth C],
H [auth G]
213Rattus norvegicusMutation(s): 0 
Entity Groups  
Sequence Clusters30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
Sequence Annotations
Expand
  • Reference Sequence
Find similar proteins by:  (by identity cutoff)  |  3D Structure
Entity ID: 6
MoleculeChains Sequence LengthOrganismDetailsImage
Fab35 heavy chainG [auth F],
I [auth H]
219Rattus norvegicusMutation(s): 0 
Entity Groups  
Sequence Clusters30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
Sequence Annotations
Expand
  • Reference Sequence
Oligosaccharides

Help

Entity ID: 7
MoleculeChains Length2D Diagram Glycosylation3D Interactions
alpha-D-mannopyranose-(1-3)-alpha-D-mannopyranose-(1-6)-[alpha-D-mannopyranose-(1-3)]beta-D-mannopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranoseJ [auth I],
O
6N-Glycosylation
Glycosylation Resources
GlyTouCan:  G09724ZC
GlyCosmos:  G09724ZC
GlyGen:  G09724ZC
Entity ID: 8
MoleculeChains Length2D Diagram Glycosylation3D Interactions
alpha-D-mannopyranose-(1-6)-beta-D-mannopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranoseK [auth J],
N
4N-Glycosylation
Glycosylation Resources
GlyTouCan:  G22573RC
GlyCosmos:  G22573RC
GlyGen:  G22573RC
Entity ID: 9
MoleculeChains Length2D Diagram Glycosylation3D Interactions
2-acetamido-2-deoxy-beta-D-glucopyranose-(1-2)-alpha-D-mannopyranose-(1-3)-[alpha-D-mannopyranose-(1-3)-alpha-D-mannopyranose-(1-6)]beta-D-mannopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranoseL [auth K]7N-Glycosylation
Glycosylation Resources
GlyTouCan:  G53168IY
GlyCosmos:  G53168IY
GlyGen:  G53168IY
Entity ID: 10
MoleculeChains Length2D Diagram Glycosylation3D Interactions
2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose
M
2N-Glycosylation
Glycosylation Resources
GlyTouCan:  G42666HT
GlyCosmos:  G42666HT
GlyGen:  G42666HT
Experimental Data & Validation

Experimental Data

  • Method: ELECTRON MICROSCOPY
  • Resolution: 2.64 Å
  • Aggregation State: PARTICLE 
  • Reconstruction Method: SINGLE PARTICLE 
EM Software:
TaskSoftware PackageVersion
RECONSTRUCTIONcryoSPARC4.4.1
MODEL REFINEMENTPHENIX1.21.1_5286

Structure Validation

View Full Validation Report



Entry History & Funding Information

Deposition Data


Funding OrganizationLocationGrant Number
Wellcome TrustUnited Kingdom102161/Z/13/Z
Medical Research Council (MRC, United Kingdom)United KingdomMR/Y012623/1

Revision History  (Full details and data files)

  • Version 1.0: 2025-05-14
    Type: Initial release