9HG8 | pdb_00009hg8

BAM-SurA complex in the swing-out state with BamC resolved


Experimental Data Snapshot

  • Method: ELECTRON MICROSCOPY
  • Resolution: 2.90 Å
  • Aggregation State: PARTICLE 
  • Reconstruction Method: SINGLE PARTICLE 

Starting Models: experimental, in silico
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wwPDB Validation   3D Report Full Report


This is version 1.0 of the entry. See complete history


Literature

Architecture and conformational dynamics of the BAM-SurA holo insertase complex.

Lehner, P.A.Degen, M.Jakob, R.P.Modaresi, S.M.Callon, M.Burmann, B.M.Maier, T.Hiller, S.

(2025) Sci Adv 11: eads6094-eads6094

  • DOI: https://doi.org/10.1126/sciadv.ads6094
  • Primary Citation of Related Structures:  
    9HG5, 9HG6, 9HG7, 9HG8, 9HG9, 9HGA

  • PubMed Abstract: 

    The proper folding of outer membrane proteins in Gram-negative bacteria relies on their delivery to the β-barrel assembly machinery (BAM) complex. The mechanism by which survival protein A (SurA), the major periplasmic chaperone, facilitates this process is not well understood. We determine the structure of the holo insertase complex, where SurA binds BAM for substrate delivery. High-resolution cryo-electron microscopy structures of four different states and a three-dimensional variability analysis show that the holo insertase complex has a large motional spectrum. SurA bound to BAM can undergo a large swinging motion between two states. This motion is uncoupled from the conformational flexibility of the BamA barrel, which can open and close without affecting SurA binding. Notably, we observed conformational coupling of the SurA swing state and the carboxyl-terminal helix grip domain of BamC. Substrate delivery by SurA to BAM appears to follow a concerted motion that encodes a gated delivery pathway through the BAM accessory proteins to the membrane entry site.


  • Organizational Affiliation

    Biozentrum, University of Basel, Basel, Switzerland.


Macromolecules
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Entity ID: 1
MoleculeChains Sequence LengthOrganismDetailsImage
Outer membrane protein assembly factor BamA790Escherichia coli K-12Mutation(s): 0 
Gene Names: bamAyaeTyzzNyzzYb0177JW0172
UniProt
Find proteins for P0A940 (Escherichia coli (strain K12))
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Go to UniProtKB:  P0A940
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UniProt GroupP0A940
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  • Reference Sequence
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Entity ID: 2
MoleculeChains Sequence LengthOrganismDetailsImage
Outer membrane protein assembly factor BamB381Escherichia coli K-12Mutation(s): 0 
Gene Names: bamByfgLb2512JW2496
UniProt
Find proteins for P77774 (Escherichia coli (strain K12))
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Go to UniProtKB:  P77774
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UniProt GroupP77774
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  • Reference Sequence
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Entity ID: 3
MoleculeChains Sequence LengthOrganismDetailsImage
Outer membrane protein assembly factor BamC320Escherichia coli K-12Mutation(s): 0 
Gene Names: bamCdapXnlpBb2477JW2462
UniProt
Find proteins for P0A903 (Escherichia coli (strain K12))
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Go to UniProtKB:  P0A903
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UniProt GroupP0A903
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  • Reference Sequence
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Entity ID: 4
MoleculeChains Sequence LengthOrganismDetailsImage
Outer membrane protein assembly factor BamD226Escherichia coli K-12Mutation(s): 0 
Gene Names: bamDyfiOb2595JW2577
UniProt
Find proteins for P0AC02 (Escherichia coli (strain K12))
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UniProt GroupP0AC02
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Entity ID: 5
MoleculeChains Sequence LengthOrganismDetailsImage
Outer membrane protein assembly factor BamE102Escherichia coli K-12Mutation(s): 0 
Gene Names: bamEsmpAb2617JW2598
UniProt
Find proteins for P0A937 (Escherichia coli (strain K12))
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UniProt GroupP0A937
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  • Reference Sequence
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Entity ID: 6
MoleculeChains Sequence LengthOrganismDetailsImage
Chaperone SurA412Escherichia coli K-12Mutation(s): 0 
Gene Names: surAb0053JW0052
EC: 5.2.1.8
UniProt
Find proteins for P0ABZ6 (Escherichia coli (strain K12))
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UniProt GroupP0ABZ6
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  • Reference Sequence
Experimental Data & Validation

Experimental Data

  • Method: ELECTRON MICROSCOPY
  • Resolution: 2.90 Å
  • Aggregation State: PARTICLE 
  • Reconstruction Method: SINGLE PARTICLE 
EM Software:
TaskSoftware PackageVersion
RECONSTRUCTIONcryoSPARC
MODEL REFINEMENTPHENIX

Structure Validation

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Entry History & Funding Information

Deposition Data


Funding OrganizationLocationGrant Number
Swiss National Science FoundationSwitzerland207755
Swiss National Science FoundationSwitzerland180541

Revision History  (Full details and data files)

  • Version 1.0: 2025-04-16
    Type: Initial release