9HI7 | pdb_00009hi7

Structure of MC.7.G5 T cell receptor in complex with MR1 R9H


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.81 Å
  • R-Value Free: 
    0.296 (Depositor), 0.295 (DCC) 
  • R-Value Work: 
    0.236 (Depositor), 0.252 (DCC) 
  • R-Value Observed: 
    0.239 (Depositor) 

Starting Models: experimental
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wwPDB Validation   3D Report Full Report


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Literature

Molecular basis underpinning MR1 allomorph recognition by an MR1-restricted T cell receptor.

Suckling, R.J.Pamukcu, C.Simmons, R.A.Fonseca, D.Grant, E.Harrison, R.Shaikh, S.A.Khanolkar, R.C.Ghadbane, H.Creese, A.Hock, M.Gligoris, T.G.Lepore, M.Karuppiah, V.Salio, M.

(2025) Front Immunol 16: 1547664-1547664

  • DOI: https://doi.org/10.3389/fimmu.2025.1547664
  • Primary Citation of Related Structures:  
    9HI7

  • PubMed Abstract: 

    The MHC-class-I-related molecule MR1 presents small metabolites of microbial and self-origin to T cells bearing semi-invariant or variant T cell receptors. One such T cell receptor, MC.7.G5, was previously shown to confer broad MR1-restricted reactivity to tumor cells but not normal cells, sparking interest in the development of non-MHC-restricted immunotherapy approaches. Here we provide cellular, biophysical, and crystallographic evidence that the MC.7.G5 TCR does not have pan-cancer specificity but is restricted to a rare allomorph of MR1, bearing the R9H mutation. Our results underscore the importance of in-depth characterization of MR1-reactive TCRs against targets expressing the full repertoire of MR1 allomorphs.


  • Organizational Affiliation
    • Immunocore Ltd., Abingdon, United Kingdom.

Macromolecules
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Entity ID: 1
MoleculeChains Sequence LengthOrganismDetailsImage
Major histocompatibility complex class I-related gene proteinA,
E [auth F]
290Homo sapiensMutation(s): 1 
Gene Names: MR1
UniProt & NIH Common Fund Data Resources
Find proteins for Q95460 (Homo sapiens)
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Go to UniProtKB:  Q95460
PHAROS:  Q95460
GTEx:  ENSG00000153029 
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UniProt GroupQ95460
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  • Reference Sequence
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Entity ID: 2
MoleculeChains Sequence LengthOrganismDetailsImage
Beta-2-microglobulinB,
F [auth G]
100Homo sapiensMutation(s): 0 
Gene Names: B2MCDABP0092HDCMA22P
UniProt & NIH Common Fund Data Resources
Find proteins for P61769 (Homo sapiens)
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PHAROS:  P61769
GTEx:  ENSG00000166710 
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UniProt GroupP61769
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  • Reference Sequence
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Entity ID: 3
MoleculeChains Sequence LengthOrganismDetailsImage
T cell receptor alpha chain MC.7.G5C [auth D],
G [auth H]
201Homo sapiensMutation(s): 0 
Gene Names: TRA
UniProt
Find proteins for P0DTU3 (Homo sapiens)
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UniProt GroupP0DTU3
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  • Reference Sequence
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Entity ID: 4
MoleculeChains Sequence LengthOrganismDetailsImage
T cell receptor beta chain MC.7.G5D [auth E],
H [auth I]
248Homo sapiensMutation(s): 0 
Gene Names: TRB
UniProt
Find proteins for P0DTU4 (Homo sapiens)
Explore P0DTU4 
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UniProt GroupP0DTU4
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  • Reference Sequence
Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.81 Å
  • R-Value Free:  0.296 (Depositor), 0.295 (DCC) 
  • R-Value Work:  0.236 (Depositor), 0.252 (DCC) 
  • R-Value Observed: 0.239 (Depositor) 
Space Group: P 1 21 1
Unit Cell:
Length ( Å )Angle ( ˚ )
a = 72.03α = 90
b = 113.202β = 90.73
c = 130.363γ = 90
Software Package:
Software NamePurpose
REFMACrefinement
autoPROCdata reduction
autoPROCdata scaling
PHASERphasing

Structure Validation

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Entry History & Funding Information

Deposition Data


Funding OrganizationLocationGrant Number
Other privateUnited Kingdom--

Revision History  (Full details and data files)

  • Version 1.0: 2025-04-23
    Type: Initial release