Dimeric state and novel nucleotide-binding pocket drive CpAgo-mediated DNA cleavage
Liu, Y., Li, S., Zhang, K.To be published.
Experimental Data Snapshot
wwPDB Validation   3D Report Full Report
Entity ID: 1 | |||||
|---|---|---|---|---|---|
| Molecule | Chains | Sequence Length | Organism | Details | Image |
| Clostridium perfringen Argonaute | 751 | Clostridium perfringens | Mutation(s): 0  | ![]() | |
UniProt | |||||
Find proteins for A0AAW4IU58 (Clostridium perfringens) Explore A0AAW4IU58  Go to UniProtKB:  A0AAW4IU58 | |||||
Entity Groups   | |||||
| Sequence Clusters | 30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity | ||||
| UniProt Group | A0AAW4IU58 | ||||
Sequence AnnotationsExpand | |||||
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Find similar nucleic acids by: Sequence | 3D Structure
Entity ID: 2 | |||||
|---|---|---|---|---|---|
| Molecule | Chains | Length | Organism | Image | |
| DNA (5'-D(P*TP*GP*AP*GP*GP*TP*AP*GP*TP*AP*GP*GP*TP*TP*GP*TP*AP*TP*AP*GP*T)-3') | B [auth C] | 21 | synthetic construct | ![]() | |
Sequence AnnotationsExpand | |||||
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Entity ID: 3 | |||||
|---|---|---|---|---|---|
| Molecule | Chains | Length | Organism | Image | |
| DNA (58-MER) | C [auth E] | 58 | synthetic construct | ![]() | |
Sequence AnnotationsExpand | |||||
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| Ligands 1 Unique | |||||
|---|---|---|---|---|---|
| ID | Chains | Name / Formula / InChI Key | 2D Diagram | 3D Interactions | |
| MN (Subject of Investigation/LOI) Query on MN | D [auth C] | MANGANESE (II) ION Mn WAEMQWOKJMHJLA-UHFFFAOYSA-N | |||
| Task | Software Package | Version |
|---|---|---|
| MODEL REFINEMENT | PHENIX | |
| RECONSTRUCTION | cryoSPARC | 4.5.1 |
| Funding Organization | Location | Grant Number |
|---|---|---|
| Other government | -- |