9JRE | pdb_00009jre

Structure of the A654C substituted ionotropic glutamate receptor mGluD1

PDB DOI: https://doi.org/10.2210/pdb9JRE/pdb
EM Map EMD-61752: EMDB EMDataResource

Classification: MEMBRANE PROTEIN
Organism(s): Mus musculus
Expression System: Homo sapiens
Mutation(s): Yes

Deposited: 2024-09-29 Released: 2026-04-08
Deposition Author(s): Dai, Z., Yin, Y.X.
Funding Organization(s): National Natural Science Foundation of China (NSFC)

Experimental Data Snapshot

Method: ELECTRON MICROSCOPY
Resolution: 4.10 Å
Aggregation State: PARTICLE
Reconstruction Method: SINGLE PARTICLE

wwPDB Validation 3D Report Full Report

This is version 1.0 of the entry. See complete history.

Literature

Structure of the A654C substituted ionotropic glutamate receptor mGluD1

Dai, Z., Yin, Y.X.

To be published.

Macromolecule Content

Total Structure Weight: 391.02 kDa
Atom Count: 24,598
Modeled Residue Count: 3,124
Deposited Residue Count: 3,488
Unique protein chains: 1

Macromolecules

Find similar proteins by:

(by identity cutoff) | 3D Structure

Entity ID: 1
Molecule	Chains	Sequence Length	Organism	Details	Image
Glutamate receptor ionotropic, delta-1	A, B, C, D	872	Mus musculus	Mutation(s): 1 Gene Names: Grid1
UniProt & NIH Common Fund Data Resources
Find proteins for Q61627 (Mus musculus) Explore Q61627 Go to UniProtKB: Q61627
IMPC: MGI:95812
Entity Groups
Sequence Clusters	30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt Group	Q61627
Sequence Annotations Expand
Reference Sequence

Experimental Data & Validation

Experimental Data

Method: ELECTRON MICROSCOPY
Resolution: 4.10 Å
Aggregation State: PARTICLE
Reconstruction Method: SINGLE PARTICLE

EM Software:

Task	Software Package	Version
MODEL REFINEMENT	PHENIX	1.19.2_4158:

Structure Validation

View Full Validation Report

Entry History & Funding Information

Deposition Data

Released Date: 2026-04-08

Deposition Author(s):

Funding Organization	Location	Grant Number
National Natural Science Foundation of China (NSFC)	China	82030081, 81874235

Revision History (Full details and data files)

Version 1.0: 2026-04-08
Type: Initial release

RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729. RCSB PDB uses resources of the National Energy Research Scientific Computing Center (NERSC), a Department of Energy User Facility.