9NAJ | pdb_00009naj

LuIII VLP - Glycan [3's(LN)3]

PDB DOI: https://doi.org/10.2210/pdb9NAJ/pdb
EM Map EMD-49196: EMDB EMDataResource

Classification: VIRUS
Organism(s): LuIII virus
Expression System: Baculoviridae sp.
Mutation(s): No

Deposited: 2025-02-12 Released: 2025-03-19
Deposition Author(s): Busuttil, K.B., Bennett, A.B.
Funding Organization(s): National Institutes of Health/National Institute of General Medical Sciences (NIH/NIGMS)

Experimental Data Snapshot

Method: ELECTRON MICROSCOPY
Resolution: 2.66 Å
Aggregation State: PARTICLE
Reconstruction Method: SINGLE PARTICLE

wwPDB Validation 3D Report Full Report

This is version 1.0 of the entry. See complete history.

Literature

Mapping the Sialic Acid Binding Sites of LuIII and H-1 Parvovirus

Busuttil, K.B., Bennett, A.B.

To be published.

Macromolecule Content

Total Structure Weight: 3,774.86 kDa
Atom Count: 266,820
Modeled Residue Count: 33,060
Deposited Residue Count: 33,060
Unique protein chains: 1

Macromolecules

Find similar proteins by:

(by identity cutoff) | 3D Structure

Entity ID: 1
Molecule	Chains	Sequence Length	Organism	Details	Image
Capsid protein VP1	A AA [auth a] AB [auth 1] B BA [auth b] A, AA [auth a], AB [auth 1], B, BA [auth b], BB [auth 2], C, CA [auth c], CB [auth 3], D, DA [auth d], DB [auth 4], E, EA [auth e], EB [auth 5], F, FA [auth f], FB [auth 6], G, GA [auth g], GB [auth 7], H, HA [auth h], HB [auth 8], I, IA [auth i], J, JA [auth j], K, KA [auth k], L, LA [auth l], M, MA [auth m], N, NA [auth n], O, OA [auth o], P, PA [auth p], Q, QA [auth q], R, RA [auth r], S, SA [auth s], T, TA [auth t], U, UA [auth u], V, VA [auth v], W, WA [auth w], X, XA [auth x], Y, YA [auth y], Z, ZA [auth z]	551	LuIII virus	Mutation(s): 0
UniProt
Find proteins for P36310 (Parvovirus LuIII) Explore P36310 Go to UniProtKB: P36310
Entity Groups
Sequence Clusters	30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt Group	P36310
Sequence Annotations Expand
Reference Sequence

Oligosaccharides

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Entity ID: 2
Molecule	Chains	Length	2D Diagram	Glycosylation	3D Interactions
N-acetyl-alpha-neuraminic acid-(2-3)-beta-D-galactopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose	AC [auth 0A], AD [auth GC], BC [auth 3A], BD [auth JC], CC [auth 6A], AC [auth 0A], AD [auth GC], BC [auth 3A], BD [auth JC], CC [auth 6A], CD [auth MC], DC [auth 9A], DD [auth PC], EC [auth CB], ED [auth SC], FC [auth FB], FD [auth VC], GC [auth IB], GD [auth YC], HC [auth LB], HD [auth bC], IB [auth 0], IC [auth OB], ID [auth eC], JB [auth BA], JC [auth RB], JD [auth hC], KB [auth EA], KC [auth UB], KD [auth kC], LB [auth HA], LC [auth XB], LD [auth nC], MB [auth KA], MC [auth aB], MD [auth qC], NB [auth NA], NC [auth dB], ND [auth tC], OB [auth QA], OC [auth gB], OD [auth wC], PB [auth TA], PC [auth jB], PD [auth zC], QB [auth WA], QC [auth mB], RB [auth ZA], RC [auth pB], SB [auth cA], SC [auth sB], TB [auth fA], TC [auth vB], UB [auth iA], UC [auth yB], VB [auth lA], VC [auth 1B], WB [auth oA], WC [auth 4B], XB [auth rA], XC [auth 7B], YB [auth uA], YC [auth AC], ZB [auth xA], ZC [auth DC]	3		N/A	Interactions Focus chain AC [auth 0A] Focus chain AD [auth GC] Focus chain BC [auth 3A] Focus chain BD [auth JC] Focus chain CC [auth 6A] Focus chain CD [auth MC] Focus chain DC [auth 9A] Focus chain DD [auth PC] Focus chain EC [auth CB] Focus chain ED [auth SC] Focus chain FC [auth FB] Focus chain FD [auth VC] Focus chain GC [auth IB] Focus chain GD [auth YC] Focus chain HC [auth LB] Focus chain HD [auth bC] Focus chain IB [auth 0] Focus chain IC [auth OB] Focus chain ID [auth eC] Focus chain JB [auth BA] Focus chain JC [auth RB] Focus chain JD [auth hC] Focus chain KB [auth EA] Focus chain KC [auth UB] Focus chain KD [auth kC] Focus chain LB [auth HA] Focus chain LC [auth XB] Focus chain LD [auth nC] Focus chain MB [auth KA] Focus chain MC [auth aB] Focus chain MD [auth qC] Focus chain NB [auth NA] Focus chain NC [auth dB] Focus chain ND [auth tC] Focus chain OB [auth QA] Focus chain OC [auth gB] Focus chain OD [auth wC] Focus chain PB [auth TA] Focus chain PC [auth jB] Focus chain PD [auth zC] Focus chain QB [auth WA] Focus chain QC [auth mB] Focus chain RB [auth ZA] Focus chain RC [auth pB] Focus chain SB [auth cA] Focus chain SC [auth sB] Focus chain TB [auth fA] Focus chain TC [auth vB] Focus chain UB [auth iA] Focus chain UC [auth yB] Focus chain VB [auth lA] Focus chain VC [auth 1B] Focus chain WB [auth oA] Focus chain WC [auth 4B] Focus chain XB [auth rA] Focus chain XC [auth 7B] Focus chain YB [auth uA] Focus chain YC [auth AC] Focus chain ZB [auth xA] Focus chain ZC [auth DC] Interactions & Density Focus chain AC [auth 0A] Focus chain AD [auth GC] Focus chain BC [auth 3A] Focus chain BD [auth JC] Focus chain CC [auth 6A] Focus chain CD [auth MC] Focus chain DC [auth 9A] Focus chain DD [auth PC] Focus chain EC [auth CB] Focus chain ED [auth SC] Focus chain FC [auth FB] Focus chain FD [auth VC] Focus chain GC [auth IB] Focus chain GD [auth YC] Focus chain HC [auth LB] Focus chain HD [auth bC] Focus chain IB [auth 0] Focus chain IC [auth OB] Focus chain ID [auth eC] Focus chain JB [auth BA] Focus chain JC [auth RB] Focus chain JD [auth hC] Focus chain KB [auth EA] Focus chain KC [auth UB] Focus chain KD [auth kC] Focus chain LB [auth HA] Focus chain LC [auth XB] Focus chain LD [auth nC] Focus chain MB [auth KA] Focus chain MC [auth aB] Focus chain MD [auth qC] Focus chain NB [auth NA] Focus chain NC [auth dB] Focus chain ND [auth tC] Focus chain OB [auth QA] Focus chain OC [auth gB] Focus chain OD [auth wC] Focus chain PB [auth TA] Focus chain PC [auth jB] Focus chain PD [auth zC] Focus chain QB [auth WA] Focus chain QC [auth mB] Focus chain RB [auth ZA] Focus chain RC [auth pB] Focus chain SB [auth cA] Focus chain SC [auth sB] Focus chain TB [auth fA] Focus chain TC [auth vB] Focus chain UB [auth iA] Focus chain UC [auth yB] Focus chain VB [auth lA] Focus chain VC [auth 1B] Focus chain WB [auth oA] Focus chain WC [auth 4B] Focus chain XB [auth rA] Focus chain XC [auth 7B] Focus chain YB [auth uA] Focus chain YC [auth AC] Focus chain ZB [auth xA] Focus chain ZC [auth DC]
Glycosylation Resources
GlyTouCan: G00065MO GlyCosmos: G00065MO GlyGen: G00065MO