9RXH | pdb_00009rxh

Cytochrome P450 decarboxylase from Staphylococcus aureus (OleT_Sa) with elaidic acid and acetate bound


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.83 Å
  • R-Value Free: 
    0.194 (Depositor), 0.204 (DCC) 
  • R-Value Work: 
    0.164 (Depositor), 0.175 (DCC) 
  • R-Value Observed: 
    0.165 (Depositor) 

Starting Model: experimental
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Literature

The cytochrome P450 decarboxylase from Staphylococcus aureus can produce a diene from a C18 monounsaturated fatty acid: A spectroscopic, structural and kinetic characterisation.

Williams, L.J.Wilson, M.T.Birrell, J.A.Lang, H.W.Bell, S.G.Worrall, J.A.R.

(2025) J Inorg Biochem 275: 113117-113117

  • DOI: https://doi.org/10.1016/j.jinorgbio.2025.113117
  • Primary Citation of Related Structures:  
    9RXH

  • PubMed Abstract: 

    Certain members of the bacterial cytochrome P450 152 family (CYP152) are peroxygenases that catalyse the decarboxylation of fatty acids into terminal olefins making them attractive biocatalysts for biofuel production. To date, the characterisation of decarboxylating CYP152s has mainly focused on their reaction with saturated fatty acid substrates. CYP152s are often co-purified with a bound substrate, which is generally removed before further experiments are conducted. In the present work we identified that heterologous over-expressed CYP152 from Staphylococcus aureus (OleT Sa ) is co-purified with the trans-monounsaturated C 18:1 fatty acid, elaidic acid. We report the spectral, thermodynamic and kinetic characteristics of OleT Sa bound to both elaidic acid and its saturated counterpart, stearic acid. Despite differing spectral profiles, metabolic and kinetic studies reveal that OleT Sa is capable of decarboxylating elaidic acid, converting it to heptadeca-1,8-diene following addition of hydrogen peroxide, at the same rate and chemoselectivity as the conversion of stearic acid to 1-heptadecane. The X-ray crystal structure of the as purified OleT Sa in complex with elaidic acid is also presented, allowing for several key residues to be identified for site-directed mutagenesis studies. The influence of the site-directed variants on C 18:0 and C 18:1 product formation, binding thermodynamics and kinetics have been investigated, showing that while spectral differences occur as a likely result of perturbing the binding pocket, this does not alter the chemoselectivity of the enzyme. Our work provides important insights into the mechanism of decarboxylation of an unsaturated fatty acid substrate by OleT Sa potentially expanding the sustainable substrate space available for CYP152s.


  • Organizational Affiliation
    • School of Life Sciences, University of Essex, Wivenhoe Park, Colchester CO4 3SQ, UK; Diamond Light Source, Harwell Science and Innovation Campus, Didcot OX11 0DE, UK.

Macromolecules
Find similar proteins by:  (by identity cutoff)  |  3D Structure
Entity ID: 1
MoleculeChains Sequence LengthOrganismDetailsImage
Cytochrome P450A [auth B]429Staphylococcus aureusMutation(s): 0 
Gene Names: CD117_04430JRU67_09580
UniProt
Find proteins for A0A657XIU7 (Mammaliicoccus sciuri)
Explore A0A657XIU7 
Go to UniProtKB:  A0A657XIU7
Entity Groups  
Sequence Clusters30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt GroupA0A657XIU7
Sequence Annotations
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  • Reference Sequence
Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.83 Å
  • R-Value Free:  0.194 (Depositor), 0.204 (DCC) 
  • R-Value Work:  0.164 (Depositor), 0.175 (DCC) 
  • R-Value Observed: 0.165 (Depositor) 
Space Group: P 32 2 1
Unit Cell:
Length ( Å )Angle ( ˚ )
a = 137.786α = 90
b = 137.786β = 90
c = 59.214γ = 120
Software Package:
Software NamePurpose
REFMACrefinement
PHASERphasing
PDB_EXTRACTdata extraction
DIALSdata reduction
DIALSdata scaling

Structure Validation

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Ligand Structure Quality Assessment 


Entry History & Funding Information

Deposition Data


Funding OrganizationLocationGrant Number
Other government--

Revision History  (Full details and data files)

  • Version 1.0: 2025-11-12
    Type: Initial release