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 9THZ | pdb_00009thz

Crystal structure of HtpG chaperone in complex with AMPPNP


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 3.32 Å
  • R-Value Free: 
    0.325 (Depositor), 0.294 (DCC) 
  • R-Value Work: 
    0.265 (Depositor), 0.273 (DCC) 
  • R-Value Observed: 
    0.268 (Depositor) 

Starting Model: in silico
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Ligand Structure Quality Assessment 


This is version 1.0 of the entry. See complete history. 

Literature

Structural and binding studies of the mycobacterial heat shock protein reveal a silent state and offer insights into dendritic cell activation.

Barra, G., Sala, M., Scala, M.C., Campiglia, P., Kim, H.J., Ruggiero, A., Berisio, R.

(2026) Int J Biol Macromol 353: 151218-151218

  • DOI: https://doi.org/10.1016/j.ijbiomac.2026.151218
  • Primary Citation Related Structures: 
    9THZ

  • PubMed Abstract: 

    HtpG Mtb of Mycobacterium tuberculosis is an ATP-dependent heat shock protein that assists the correct folding of nascent and stress-accumulated misfolded proteins, in concert with other chaperones. Besides playing a role in stress response, it is able to elicit an immune response against M. tuberculosis infection by activating Dendritic Cells in a Toll Like Receptor 4-mediated manner. However, we lack a full understanding of the molecular determinants of HtpG Mtb catalytic activity and Toll Like Receptor 4 activation, due to the lack of structural and biophysical data. Here, we report the first crystal structure of HtpG Mtb , in complex with the non-hydrolysable form of ATP. The crystal structure reveals that the HtpG Mtb dimer adopts a conformationally silent structure, that precludes the dimerisation of the chaperone catalytic domains needed for ATP hydrolysis. Also, binding studies show that HtpG Mtb directly interacts with Toll Like Receptor 4 with a nanomolar affinity, and that this interaction allows HtpG Mtb dimer to engage two host receptor molecules. This finding suggests that activation of Toll Like Receptor 4 by HtpG Mtb is due to its ability to induce the dimerisation of the host receptor, an essential step for initiating the entire signaling cascade.


  • Organizational Affiliation: 
    • Institute of Biostructures and Bioimaging, Italian Research Council (CNR), 80131, Naples, Italy.

Macromolecule Content 

  • Total Structure Weight: 150.19 kDa 
  • Atom Count: 9,522 
  • Modeled Residue Count: 1,209 
  • Deposited Residue Count: 1,320 
  • Unique protein chains: 1

Macromolecules

Find similar proteins by:|  3D Structure
Entity ID: 1
MoleculeChains  Sequence LengthOrganismDetailsImage
Chaperone protein HtpG
A, B
660Mycobacterium tuberculosisMutation(s): 0 
Gene Names: htpG, MRA_2316
UniProt
Find proteins for A5U4Y2 (Mycobacterium tuberculosis (strain ATCC 25177 / H37Ra))
Explore A5U4Y2 
Go to UniProtKB:  A5U4Y2
Entity Groups
Sequence Clusters30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt GroupA5U4Y2
Sequence Annotations
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Reference Sequence

Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 3.32 Å
  • R-Value Free:  0.325 (Depositor), 0.294 (DCC) 
  • R-Value Work:  0.265 (Depositor), 0.273 (DCC) 
  • R-Value Observed: 0.268 (Depositor) 
Space Group: P 21 21 2
Unit Cell:
Length ( Å )Angle ( ˚ )
a = 173.972α = 90
b = 83.489β = 90
c = 99.096γ = 90
Software Package:
Software NamePurpose
PHENIXrefinement
autoPROCdata reduction
Aimlessdata scaling
Auto-Rickshawphasing

Structure Validation

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Ligand Structure Quality Assessment 


Entry History 

& Funding Information

Deposition Data


Funding OrganizationLocationGrant Number
NextGenerationEU-MUR PNRR Extended Partnership initiative on Emerging Infectious Diseases (INF-ACT)Italy--
PRINP2022JE8FN

Revision History  (Full details and data files)

  • Version 1.0: 2026-09-30
    Type: Initial release