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 9Z91 | pdb_00009z91

Human Ferritin Heavy Chain in the presence of Mg-ATP


Experimental Data Snapshot

  • Method: ELECTRON MICROSCOPY
  • Resolution: 1.49 Å
  • Aggregation State: PARTICLE 
  • Reconstruction Method: SINGLE PARTICLE 

wwPDB Validation 3D Report Full Report

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This is version 1.0 of the entry. See complete history. 

Literature

Ferritin iron uptake and oxidation are dynamically modulated by nucleotide phosphate architecture via electrostatic gating.

Rajendran, A., Henley, S., Nannenga, B.L., Terashi, G., Srivastava, A., Kihara, D., Bou-Abdallah, F.

(2026) Int J Biol Macromol 352: 151118-151118

  • DOI: https://doi.org/10.1016/j.ijbiomac.2026.151118
  • Primary Citation Related Structures: 
    9Z91

  • PubMed Abstract: 

    Ferritin safeguards cells from iron-induced oxidative stress by oxidizing and storing Fe 2+ within its nanocage, yet how its macromolecular architecture enables responsiveness to the cellular chemical environment remains unclear. Here, we show that ferritin's iron-oxidation activity is modulated by an electrostatic gating mechanism centered at its 3-fold channels and sensitive to solution charge conditions representative of intracellular metabolites. At physiologically relevant nucleotide concentrations, ferritin-catalyzed Fe 2+ oxidation is strongly attenuated in the presence of triphosphate nucleotides, while diphosphates and monophosphates exert progressively weaker effects, indicating that ferritin responds selectively to the charge density and geometry of the phosphate chain, rather than nucleotide identity. High-resolution cryo-electron microscopy identifies condition-dependent differences in non-protein density within and near the ferritin 3-fold channels, consistent with changes in the local solvent and/or ion environment, rather than discrete ligand binding. Fluorescence and calorimetric measurements reveal weak, reversible nucleotide association (K D  ∼ 1 mM), supporting a low-affinity, dynamic electrostatic interaction mode. The inhibitory trend persists under reduced oxygen conditions and across ferritin assemblies with varying H/L composition, supporting physiological relevance across cellular oxygen tensions and native ferritin heteropolymers. Ferritin activity is similarly modulated in bacterial, yeast, and human cell lysates under near-physiological conditions, demonstrating the robustness of this behavior in complex environments. Together, these findings establish ferritin as a biological macromolecule whose intrinsic channel electrostatics enable reversible modulation of iron uptake and oxidation in response to its chemical environment.


  • Organizational Affiliation: 
    • Department of Chemistry, State University of New York, Potsdam, NY, USA.

Macromolecule Content 

  • Total Structure Weight: 510.14 kDa 
  • Atom Count: 36,554 
  • Modeled Residue Count: 4,152 
  • Deposited Residue Count: 4,392 
  • Unique protein chains: 1

Macromolecules

Find similar proteins by:|  3D Structure
Entity ID: 1
MoleculeChains  Sequence LengthOrganismDetailsImage
Ferritin heavy chain183Homo sapiensMutation(s): 0 
Gene Names: FTH1, FTH, FTHL6, OK/SW-cl.84, PIG15
EC: 1.16.3.1
UniProt & NIH Common Fund Data Resources
Find proteins for P02794 (Homo sapiens)
Explore P02794 
Go to UniProtKB:  P02794
PHAROS:  P02794
GTEx:  ENSG00000167996 
Entity Groups
Sequence Clusters30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt GroupP02794
Sequence Annotations
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Reference Sequence

Experimental Data & Validation

Experimental Data

  • Method: ELECTRON MICROSCOPY
  • Resolution: 1.49 Å
  • Aggregation State: PARTICLE 
  • Reconstruction Method: SINGLE PARTICLE 
EM Software:
TaskSoftware PackageVersion
RECONSTRUCTIONcryoSPARC

Structure Validation

View Full Validation Report



Entry History 

& Funding Information

Deposition Data


Funding OrganizationLocationGrant Number
National Science Foundation (NSF, United States)United States1942084
National Science Foundation (NSF, United States)United States2435395

Revision History  (Full details and data files)

  • Version 1.0: 2026-09-30
    Type: Initial release