9A3U | pdb_00009a3u

A representative atomistic model of the Populus Secondary Cell Wall

Integrative structure models are generated using different types of input information, including varied experimental data, physical principles, statistical preferences, and other prior information.


Integrative Structure Snapshot

  • Multi-Scale: No 
  • Multi-State: No 
  • Ordered-State: No 
  • Deposited Models: 1 
  • Representative Model: 1 

This is version 1.0 of the entry. See complete history


Literature

Atomistic, Macromolecular Model of the Populus Secondary Cell Wall Informed by Solid-State NMR

Addison, B.Bu, L.Bharadwaj, V.S.Crowley, M.F.Harman-Ware, A.E.Crowley, M.F.Bomble, Y.Ciesielski, P.N.

(2024) Sci Adv 30: 1545-1614


Macromolecules

Find similar nucleic acids by:  Sequence   |   3D Structure  

Entity ID: 1
MoleculeChains LengthOrganismImage
Lignin
A [auth L10],
AA [auth L27q],
AB [auth L53Q],
AC [auth L79k],
AD [auth L105K],
B [auth L21],
BA [auth L28r],
BB [auth L54R],
BC [auth L80l],
BD [auth L106L],
C [auth L32],
CA [auth L29s],
CB [auth L55S],
CC [auth L81m],
CD [auth L107M],
D [auth L43],
DA [auth L30t],
DB [auth L56T],
DC [auth L82n],
DD [auth L108N],
E [auth L54],
EA [auth L31u],
EB [auth L57U],
EC [auth L83o],
ED [auth L109O],
F [auth L65],
FA [auth L32v],
FB [auth L58V],
FC [auth L84p],
FD [auth L110P],
G [auth L76],
GA [auth L33w],
GB [auth L590],
GC [auth L85q],
GD [auth L111Q],
H [auth L87],
HA [auth L34x],
HB [auth L601],
HC [auth L86r],
HD [auth L112R],
I [auth L98],
IA [auth L35y],
IB [auth L612],
IC [auth L87s],
ID [auth L113S],
J [auth L109],
JA [auth L36z],
JB [auth L623],
JC [auth L88t],
JD [auth L114T],
K [auth L11a],
KA [auth L37A],
KB [auth L634],
KC [auth L89u],
KD [auth L115U],
L [auth L12b],
LA [auth L38B],
LB [auth L645],
LC [auth L90v],
M [auth L13c],
MA [auth L39C],
MB [auth L656],
MC [auth L91w],
N [auth L14d],
NA [auth L40D],
NB [auth L667],
NC [auth L92x],
O [auth L15e],
OA [auth L41E],
OB [auth L678],
OC [auth L93y],
P [auth L16f],
PA [auth L42F],
PB [auth L689],
PC [auth L94z],
Q [auth L17g],
QA [auth L43G],
QB [auth L69a],
QC [auth L95A],
R [auth L18h],
RA [auth L44H],
RB [auth L70b],
RC [auth L96B],
S [auth L19i],
SA [auth L45I],
SB [auth L71c],
SC [auth L97C],
T [auth L20j],
TA [auth L46J],
TB [auth L72d],
TC [auth L98D],
U [auth L21k],
UA [auth L47K],
UB [auth L73e],
UC [auth L99E],
V [auth L22l],
VA [auth L48L],
VB [auth L74f],
VC [auth L100F],
W [auth L23m],
WA [auth L49M],
WB [auth L75g],
WC [auth L101G],
X [auth L24n],
XA [auth L50N],
XB [auth L76h],
XC [auth L102H],
Y [auth L25o],
YA [auth L51O],
YB [auth L77i],
YC [auth L103I],
Z [auth L26p],
ZA [auth L52P],
ZB [auth L78j],
ZC [auth L104J]
20N/A
Sequence Annotations
Expand
  • Reference Sequence
Oligosaccharides

Help

Entity ID: 2
MoleculeChains Length2D Diagram Glycosylation3D Interactions
Xylan-m2
BF [auth X43G],
CF [auth X44H],
DF [auth X45I],
EF [auth X46J],
FF [auth X47K],
BF [auth X43G],
CF [auth X44H],
DF [auth X45I],
EF [auth X46J],
FF [auth X47K],
GE [auth X1l],
HE [auth X2m],
IE [auth X3n],
JE [auth X4o],
KE [auth X5p],
LD [auth X220],
MD [auth X231],
ND [auth X242],
OD [auth X253],
PD [auth X264]
45N/AN/A
Entity ID: 3
MoleculeChains Length2D Diagram Glycosylation3D Interactions
Xylan-m4
GF [auth X48L],
HF [auth X49M],
IF [auth X50N],
JF [auth X51O],
KF [auth X52P],
GF [auth X48L],
HF [auth X49M],
IF [auth X50N],
JF [auth X51O],
KF [auth X52P],
LE [auth X6q],
ME [auth X7r],
NE [auth X8s],
OE [auth X9t],
PE [auth X10u],
QD [auth X275],
RD [auth X286],
SD [auth X297],
TD [auth X308],
UD [auth X319]
45N/AN/A
Entity ID: 4
MoleculeChains Length2D Diagram Glycosylation3D Interactions
Xylan-m6
LF [auth X53Q],
MF [auth X54R],
NF [auth X55S],
OF [auth X56T],
PF [auth X57U],
LF [auth X53Q],
MF [auth X54R],
NF [auth X55S],
OF [auth X56T],
PF [auth X57U],
QE [auth X11v],
RE [auth X12w],
SE [auth X13x],
TE [auth X14y],
UE [auth X15z],
VD [auth X32a],
WD [auth X33b],
XD [auth X34c],
YD [auth X35d],
ZD [auth X36e]
45N/AN/A
Entity ID: 5
MoleculeChains Length2D Diagram Glycosylation3D Interactions
Xylan-m8
AE [auth X37f],
AF [auth X21F],
BE [auth X38g],
CE [auth X39h],
DE [auth X40i],
AE [auth X37f],
AF [auth X21F],
BE [auth X38g],
CE [auth X39h],
DE [auth X40i],
EE [auth X41j],
FE [auth X42k],
QF [auth X58V],
RF [auth X59W],
SF [auth X60X],
VE [auth X16A],
WE [auth X17B],
XE [auth X18C],
YE [auth X19D],
ZE [auth X20E]
45N/AN/A
Entity ID: 6
MoleculeChains Length2D Diagram Glycosylation3D Interactions
Cellulose
AG [auth CEL17],
AH [auth CEL2x],
AI [auth CEL4n],
AJ [auth CEL5d],
AK [auth CEL73],
AG [auth CEL17],
AH [auth CEL2x],
AI [auth CEL4n],
AJ [auth CEL5d],
AK [auth CEL73],
AL [auth CEL8t],
BG [auth CEL18],
BH [auth CEL2y],
BI [auth CEL4o],
BJ [auth CEL5e],
BK [auth CEL74],
BL [auth CEL8u],
CG [auth CEL19],
CH [auth CEL2z],
CI [auth CEL4p],
CJ [auth CEL5f],
CK [auth CEL75],
CL [auth CEL8v],
DG [auth CEL1a],
DH [auth CEL30],
DI [auth CEL4q],
DJ [auth CEL5g],
DK [auth CEL76],
DL [auth CEL8w],
EG [auth CEL1b],
EH [auth CEL31],
EI [auth CEL4r],
EJ [auth CEL5h],
EK [auth CEL77],
EL [auth CEL8x],
FG [auth CEL1c],
FH [auth CEL32],
FI [auth CEL4s],
FJ [auth CEL6i],
FK [auth CEL78],
FL [auth CEL8y],
GG [auth CEL1d],
GH [auth CEL33],
GI [auth CEL4t],
GJ [auth CEL6j],
GK [auth CEL79],
GL [auth CEL8z],
HG [auth CEL1e],
HH [auth CEL34],
HI [auth CEL4u],
HJ [auth CEL6k],
HK [auth CEL7a],
IG [auth CEL1f],
IH [auth CEL35],
II [auth CEL4v],
IJ [auth CEL6l],
IK [auth CEL7b],
JG [auth CEL1g],
JH [auth CEL36],
JI [auth CEL4w],
JJ [auth CEL6m],
JK [auth CEL7c],
KG [auth CEL1h],
KH [auth CEL37],
KI [auth CEL4x],
KJ [auth CEL6n],
KK [auth CEL7d],
LG [auth CEL2i],
LH [auth CEL38],
LI [auth CEL4y],
LJ [auth CEL6o],
LK [auth CEL7e],
MG [auth CEL2j],
MH [auth CEL39],
MI [auth CEL4z],
MJ [auth CEL6p],
MK [auth CEL7f],
NG [auth CEL2k],
NH [auth CEL3a],
NI [auth CEL50],
NJ [auth CEL6q],
NK [auth CEL7g],
OG [auth CEL2l],
OH [auth CEL3b],
OI [auth CEL51],
OJ [auth CEL6r],
OK [auth CEL7h],
PG [auth CEL2m],
PH [auth CEL3c],
PI [auth CEL52],
PJ [auth CEL6s],
PK [auth CEL8i],
QG [auth CEL2n],
QH [auth CEL3d],
QI [auth CEL53],
QJ [auth CEL6t],
QK [auth CEL8j],
RG [auth CEL2o],
RH [auth CEL3e],
RI [auth CEL54],
RJ [auth CEL6u],
RK [auth CEL8k],
SG [auth CEL2p],
SH [auth CEL3f],
SI [auth CEL55],
SJ [auth CEL6v],
SK [auth CEL8l],
TF [auth CEL10],
TG [auth CEL2q],
TH [auth CEL3g],
TI [auth CEL56],
TJ [auth CEL6w],
TK [auth CEL8m],
UF [auth CEL11],
UG [auth CEL2r],
UH [auth CEL3h],
UI [auth CEL57],
UJ [auth CEL6x],
UK [auth CEL8n],
VF [auth CEL12],
VG [auth CEL2s],
VH [auth CEL4i],
VI [auth CEL58],
VJ [auth CEL6y],
VK [auth CEL8o],
WF [auth CEL13],
WG [auth CEL2t],
WH [auth CEL4j],
WI [auth CEL59],
WJ [auth CEL6z],
WK [auth CEL8p],
XF [auth CEL14],
XG [auth CEL2u],
XH [auth CEL4k],
XI [auth CEL5a],
XJ [auth CEL70],
XK [auth CEL8q],
YF [auth CEL15],
YG [auth CEL2v],
YH [auth CEL4l],
YI [auth CEL5b],
YJ [auth CEL71],
YK [auth CEL8r],
ZF [auth CEL16],
ZG [auth CEL2w],
ZH [auth CEL4m],
ZI [auth CEL5c],
ZJ [auth CEL72],
ZK [auth CEL8s]
40N/AN/A
Small Molecules
Ligands 1 Unique
IDChains Name / Formula / InChI Key2D Diagram3D Interactions
NA
Query on NA

Download Ideal Coordinates CCD File 
AM [auth L13c]
AN [auth L24n]
AO [auth L30t]
AP [auth L40D]
AQ [auth L47K]
AM [auth L13c],
AN [auth L24n],
AO [auth L30t],
AP [auth L40D],
AQ [auth L47K],
AR [auth L57U],
AS [auth L73e],
AT [auth L77i],
AU [auth L84p],
AV [auth L93y],
AW [auth L111Q],
BM [auth L13c],
BN [auth L25o],
BO [auth L31u],
BP [auth L40D],
BQ [auth L47K],
BR [auth L57U],
BS [auth L73e],
BT [auth L77i],
BU [auth L84p],
BV [auth L95A],
BW [auth L111Q],
CM [auth L14d],
CN [auth L25o],
CO [auth L33w],
CP [auth L40D],
CQ [auth L47K],
CR [auth L57U],
CS [auth L73e],
CT [auth L77i],
CU [auth L84p],
CV [auth L95A],
CW [auth L111Q],
DM [auth L14d],
DN [auth L25o],
DO [auth L33w],
DP [auth L40D],
DQ [auth L48L],
DR [auth L57U],
DS [auth L73e],
DT [auth L77i],
DU [auth L84p],
DV [auth L95A],
DW [auth L111Q],
EM [auth L14d],
EN [auth L25o],
EO [auth L33w],
EP [auth L40D],
EQ [auth L49M],
ER [auth L57U],
ES [auth L73e],
ET [auth L77i],
EU [auth L84p],
EV [auth L95A],
EW [auth L111Q],
FM [auth L14d],
FN [auth L25o],
FO [auth L35y],
FP [auth L40D],
FQ [auth L49M],
FR [auth L57U],
FS [auth L73e],
FT [auth L77i],
FU [auth L84p],
FV [auth L96B],
FW [auth L111Q],
GM [auth L14d],
GN [auth L25o],
GO [auth L35y],
GP [auth L40D],
GQ [auth L49M],
GR [auth L590],
GS [auth L73e],
GT [auth L77i],
GU [auth L84p],
GV [auth L96B],
GW [auth L111Q],
HL [auth L54],
HM [auth L15e],
HN [auth L25o],
HO [auth L35y],
HP [auth L40D],
HQ [auth L50N],
HR [auth L601],
HS [auth L73e],
HT [auth L77i],
HU [auth L84p],
HV [auth L96B],
HW [auth L111Q],
IL [auth L76],
IM [auth L16f],
IN [auth L25o],
IO [auth L35y],
IP [auth L40D],
IQ [auth L50N],
IR [auth L601],
IS [auth L73e],
IT [auth L77i],
IU [auth L84p],
IV [auth L96B],
IW [auth L111Q],
JL [auth L76],
JM [auth L16f],
JN [auth L25o],
JO [auth L36z],
JP [auth L40D],
JQ [auth L50N],
JR [auth L601],
JS [auth L73e],
JT [auth L77i],
JU [auth L84p],
JV [auth L96B],
JW [auth L111Q],
KL [auth L76],
KM [auth L16f],
KN [auth L25o],
KO [auth L36z],
KP [auth L40D],
KQ [auth L50N],
KR [auth L601],
KS [auth L73e],
KT [auth L77i],
KU [auth L84p],
KV [auth L98D],
KW [auth L111Q],
LL [auth L76],
LM [auth L16f],
LN [auth L25o],
LO [auth L36z],
LP [auth L40D],
LQ [auth L52P],
LR [auth L601],
LS [auth L73e],
LT [auth L77i],
LU [auth L85q],
LV [auth L99E],
LW [auth L111Q],
ML [auth L76],
MM [auth L16f],
MN [auth L27q],
MO [auth L37A],
MP [auth L41E],
MQ [auth L55S],
MR [auth L612],
MS [auth L73e],
MT [auth L77i],
MU [auth L85q],
MV [auth L99E],
MW [auth L111Q],
NL [auth L76],
NM [auth L16f],
NN [auth L27q],
NO [auth L37A],
NP [auth L41E],
NQ [auth L55S],
NR [auth L634],
NS [auth L73e],
NT [auth L78j],
NU [auth L86r],
NV [auth L100F],
NW [auth L111Q],
OL [auth L76],
OM [auth L18h],
ON [auth L27q],
OO [auth L37A],
OP [auth L42F],
OQ [auth L55S],
OR [auth L645],
OS [auth L73e],
OT [auth L79k],
OU [auth L91w],
OV [auth L100F],
OW [auth L111Q],
PL [auth L76],
PM [auth L18h],
PN [auth L27q],
PO [auth L37A],
PP [auth L43G],
PQ [auth L55S],
PR [auth L645],
PS [auth L73e],
PT [auth L80l],
PU [auth L91w],
PV [auth L100F],
PW [auth L111Q],
QL [auth L87],
QM [auth L18h],
QN [auth L27q],
QO [auth L37A],
QP [auth L45I],
QQ [auth L55S],
QR [auth L645],
QS [auth L73e],
QT [auth L80l],
QU [auth L91w],
QV [auth L100F],
QW [auth L111Q],
RL [auth L87],
RM [auth L18h],
RN [auth L27q],
RO [auth L37A],
RP [auth L46J],
RQ [auth L55S],
RR [auth L645],
RS [auth L73e],
RT [auth L81m],
RU [auth L91w],
RV [auth L100F],
RW [auth L111Q],
SL [auth L87],
SM [auth L19i],
SN [auth L27q],
SO [auth L38B],
SP [auth L46J],
SQ [auth L55S],
SR [auth L645],
SS [auth L73e],
ST [auth L82n],
SU [auth L91w],
SV [auth L100F],
SW [auth L111Q],
TL [auth L87],
TM [auth L21k],
TN [auth L27q],
TO [auth L38B],
TP [auth L47K],
TQ [auth L55S],
TR [auth L645],
TS [auth L73e],
TT [auth L83o],
TU [auth L92x],
TV [auth L102H],
TW [auth L114T],
UL [auth L87],
UM [auth L22l],
UN [auth L28r],
UO [auth L38B],
UP [auth L47K],
UQ [auth L55S],
UR [auth L645],
US [auth L74f],
UT [auth L84p],
UU [auth L92x],
UV [auth L104J],
UW [auth L114T],
VL [auth L98],
VM [auth L23m],
VN [auth L29s],
VO [auth L38B],
VP [auth L47K],
VQ [auth L56T],
VR [auth L667],
VS [auth L76h],
VT [auth L84p],
VU [auth L92x],
VV [auth L105K],
WL [auth L98],
WM [auth L24n],
WN [auth L29s],
WO [auth L38B],
WP [auth L47K],
WQ [auth L56T],
WR [auth L69a],
WS [auth L76h],
WT [auth L84p],
WU [auth L92x],
WV [auth L105K],
XL [auth L98],
XM [auth L24n],
XN [auth L29s],
XO [auth L38B],
XP [auth L47K],
XQ [auth L56T],
XR [auth L69a],
XS [auth L76h],
XT [auth L84p],
XU [auth L92x],
XV [auth L106L],
YL [auth L12b],
YM [auth L24n],
YN [auth L29s],
YO [auth L38B],
YP [auth L47K],
YQ [auth L57U],
YR [auth L69a],
YS [auth L77i],
YT [auth L84p],
YU [auth L92x],
YV [auth L107M],
ZL [auth L12b],
ZM [auth L24n],
ZN [auth L30t],
ZO [auth L38B],
ZP [auth L47K],
ZQ [auth L57U],
ZR [auth L70b],
ZS [auth L77i],
ZT [auth L84p],
ZU [auth L92x],
ZV [auth L111Q]
SODIUM ION
Na
FKNQFGJONOIPTF-UHFFFAOYSA-N
Experimental Data & Validation

Integrative Structure Snapshot

  • Multi-Scale: No 
  • Multi-State: No 
  • Ordered-State: No 
  • Deposited Models: 1 
  • Representative Model: 1 

Structure Validation

View Full Validation Report

View Summary Validation Report



Entry History 

Deposition Data

Revision History  (Full details and data files)

  • Version 1.0: 2024-01-05
    Type: Initial release