9A3W | pdb_00009a3w

Structure of the phage immune evasion protein Gad1 bound to the Gabija GajAB complex

• PDB DOI: https://doi.org/10.2210/pdb9A3W/pdb

• Organism(s): Bacillus cereus (strain VD045), Bacillus phage phi3T
• Mutation(s): No 


• Deposited: 2023-10-26 Released: 2024-01-05 
• Deposition Author(s): Antine, S.P., Johnson, A.G., Mooney, S.E., Mayer, M.L., Kranzusch, P.J.

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Integrative Structure Snapshot

• Multi-Scale: No 
• Multi-State: No 
• Ordered-State: No 
• Deposited Models: 1 
• Representative Model: 1 

Literature

Structural basis of Gabija anti-phage defence and viral immune evasion

Antine, S.P., Johnson, A.G., Mooney, S.E., Leavitt, A., Mayer, M.L., Yirmyia, E., Amitai, G., Sorek, R., Kranzusch, P.J.

(2023) Nature 

• DOI: https://doi.org/10.1038/s41586-023-06855-2

Assembly  

Global Symmetry: Dihedral - D2  (Explore in 3D)
Global Stoichiometry: Hetero 16-mer - A8B4C4 Pseudo Symmetry: Dihedral - D2  (Explore in 3D)
Pseudo Stoichiometry: Hetero 16-mer - A4B4C4D4 

Macromolecule Content 

• Total Structure Weight: 920.81 kDa 
• Atom Count: 55,300 
• Modeled Residue Count: 6,836 
• Deposited Residue Count: 6,836 
• Unique protein chains: 3

Macromolecules

Entity ID: 1
Molecule	Chains	Sequence Length	Organism	Details	Image
Gabija protein GajA	A, B, C, D	626	Bacillus cereus (strain VD045)	Mutation(s): 0  Gene Names: gajA EC: 3.1
UniProt
Find proteins for J8H9C1 (Bacillus cereus (strain VD045)) Explore J8H9C1  Go to UniProtKB:  J8H9C1

Entity ID: 2
Molecule	Chains	Sequence Length	Organism	Details	Image
Gabija protein GajB	E, F, G, H	493	Bacillus cereus (strain VD045)	Mutation(s): 0  Gene Names: gajB
UniProt
Find proteins for J8HQ06 (Bacillus cereus (strain VD045)) Explore J8HQ06  Go to UniProtKB:  J8HQ06

Entity ID: 3
Molecule	Chains	Sequence Length	Organism	Details	Image
Gabija anti-defense 1	I, J, K, L, M, N, O, P	295	Bacillus phage phi3T	Mutation(s): 0  Gene Names: gad1
UniProt
Find proteins for A0A1P8CWZ3 (Bacillus phage phi3T) Explore A0A1P8CWZ3  Go to UniProtKB:  A0A1P8CWZ3

Experimental Data & Validation

Integrative Structure Snapshot

• Multi-Scale: No 
• Multi-State: No 
• Ordered-State: No 
• Deposited Models: 1 
• Representative Model: 1 

Structure Validation

View Full Validation Report

View Summary Validation Report

Entry History 

Deposition Data

• Released Date: 2024-01-05 
Deposition Author(s): Antine, S.P., Johnson, A.G., Mooney, S.E., Mayer, M.L., Kranzusch, P.J.

Revision History  

• Version 1.0: 2024-01-05
  Type: Initial release