7PLU | pdb_00007plu

Cryo-EM structure of the actomyosin-V complex in the rigor state (central 3er/2er)


Domain Annotation: SCOP2 Classification SCOP2 Database Homepage

ChainsTypeFamily Name Domain Identifier Family IdentifierProvenance Source (Version)
ASCOP2B SuperfamilyMyosin s1 fragment, N-terminal domain 8032925 3000319 SCOP2B (2022-06-29)
ASCOP2B SuperfamilyP-loop motor domain 8032926 3002036 SCOP2B (2022-06-29)
E [auth D]SCOP2B SuperfamilyP-loop motor domain 8032926 3002036 SCOP2B (2022-06-29)
E [auth D]SCOP2B SuperfamilyMyosin s1 fragment, N-terminal domain 8032925 3000319 SCOP2B (2022-06-29)
B [auth C]SCOP2B SuperfamilyActin-like ATPases 8040509 3000092 SCOP2B (2022-06-29)
B [auth C]SCOP2B SuperfamilyActin-like ATPases 8040506 3000092 SCOP2B (2022-06-29)
FSCOP2B SuperfamilyActin-like ATPases 8040506 3000092 SCOP2B (2022-06-29)
FSCOP2B SuperfamilyActin-like ATPases 8040509 3000092 SCOP2B (2022-06-29)
I [auth G]SCOP2B SuperfamilyActin-like ATPases 8040506 3000092 SCOP2B (2022-06-29)
I [auth G]SCOP2B SuperfamilyActin-like ATPases 8040509 3000092 SCOP2B (2022-06-29)
D [auth B]SCOP2B SuperfamilyEF-hand 8032927 3001983 SCOP2B (2022-06-29)
H [auth E]SCOP2B SuperfamilyEF-hand 8032927 3001983 SCOP2B (2022-06-29)

Domain Annotation: ECOD Classification ECOD Database Homepage

ChainsFamily NameDomain Identifier ArchitecturePossible HomologyHomologyTopologyFamilyProvenance Source (Version)
AMyosin_N_1e7pluA2 A: beta barrelsX: SH3H: SH3T: SH3F: Myosin_N_1ECOD (1.6)
AIQ_1e7pluA3 A: alpha bundlesX: Myosin VI lever arm (From Topology)H: Myosin VI lever arm (From Topology)T: Myosin VI lever armF: IQ_1ECOD (1.6)
AMyosin_heade7pluA1 A: a/b three-layered sandwichesX: P-loop domains-likeH: P-loop domains-relatedT: P-loop containing nucleoside triphosphate hydrolasesF: Myosin_headECOD (1.6)
E [auth D]Myosin_N_1e7pluD2 A: beta barrelsX: SH3H: SH3T: SH3F: Myosin_N_1ECOD (1.6)
E [auth D]IQ_1e7pluD3 A: alpha bundlesX: Myosin VI lever arm (From Topology)H: Myosin VI lever arm (From Topology)T: Myosin VI lever armF: IQ_1ECOD (1.6)
E [auth D]Myosin_heade7pluD1 A: a/b three-layered sandwichesX: P-loop domains-likeH: P-loop domains-relatedT: P-loop containing nucleoside triphosphate hydrolasesF: Myosin_headECOD (1.6)
B [auth C]Actin_1ste7pluC2 A: mixed a+b and a/bX: Ribonuclease H-likeH: Ribonuclease H-like (From Topology)T: Ribonuclease H-likeF: Actin_1stECOD (1.6)
B [auth C]Actin_2nde7pluC1 A: mixed a+b and a/bX: Ribonuclease H-likeH: Ribonuclease H-like (From Topology)T: Ribonuclease H-likeF: Actin_2ndECOD (1.6)
FActin_1ste7pluF2 A: mixed a+b and a/bX: Ribonuclease H-likeH: Ribonuclease H-like (From Topology)T: Ribonuclease H-likeF: Actin_1stECOD (1.6)
FActin_2nde7pluF1 A: mixed a+b and a/bX: Ribonuclease H-likeH: Ribonuclease H-like (From Topology)T: Ribonuclease H-likeF: Actin_2ndECOD (1.6)
I [auth G]Actin_1ste7pluG2 A: mixed a+b and a/bX: Ribonuclease H-likeH: Ribonuclease H-like (From Topology)T: Ribonuclease H-likeF: Actin_1stECOD (1.6)
I [auth G]Actin_2nde7pluG1 A: mixed a+b and a/bX: Ribonuclease H-likeH: Ribonuclease H-like (From Topology)T: Ribonuclease H-likeF: Actin_2ndECOD (1.6)
D [auth B]EF-hand_7_8e7pluB2 A: alpha arraysX: EF-handH: EF-hand-relatedT: EF-handF: EF-hand_7_8ECOD (1.6)
D [auth B]EF-hand_7_5e7pluB1 A: alpha arraysX: EF-handH: EF-hand-relatedT: EF-handF: EF-hand_7_5ECOD (1.6)
H [auth E]EF-hand_7_8e7pluE1 A: alpha arraysX: EF-handH: EF-hand-relatedT: EF-handF: EF-hand_7_8ECOD (1.6)
H [auth E]EF-hand_7_5e7pluE2 A: alpha arraysX: EF-handH: EF-hand-relatedT: EF-handF: EF-hand_7_5ECOD (1.6)

Domain Annotation: CATH CATH Database Homepage

ChainDomainClassArchitectureTopologyHomologyProvenance Source (Version)
A1.20.58.530 Mainly Alpha Up-down Bundle Methane Monooxygenase Hydroxylase Chain G, domain 1CATH (utative)
E [auth D]1.20.58.530 Mainly Alpha Up-down Bundle Methane Monooxygenase Hydroxylase Chain G, domain 1CATH (utative)

Protein Family Annotation Pfam Database Homepage

ChainsAccessionNameDescriptionCommentsSource
A,
E [auth D]
PF00612IQ calmodulin-binding motif (IQ)IQ calmodulin-binding motif- Motif
A,
E [auth D]
PF00063Myosin head (motor domain) (Myosin_head)Myosin head (motor domain)Domain

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

ChainsPolymerMolecular FunctionBiological ProcessCellular Component
A,
E [auth D]
Unconventional myosin-Va
B [auth C],
F,
I [auth G]
Actin, alpha skeletal muscle
C [auth H],
G [auth I],
J
Phalloidin---
D [auth B],
H [auth E]
Myosin light chain 6B

Protein Modification Annotation

Modified Residue(s)
ChainResidue(s)Description
B [auth C],
F,
I [auth G]
HIC Parent Component: HIS

RESIDAA0317

PSI-MOD :  1'-methyl-L-histidine MOD:00322
C [auth H],
G [auth I],
J
DTH RESIDAA0317 , AA0199

PSI-MOD :  1'-methyl-L-histidine MOD:00322 , D-allo-threonine MOD:00863
C [auth H],
G [auth I],
J
EEP RESIDAA0317 , AA0199

C [auth H],
G [auth I],
J
HYP Parent Component: PRO

RESIDAA0317 , AA0199 , AA0030

PSI-MOD :  1'-methyl-L-histidine MOD:00322 , D-allo-threonine MOD:00863 , 4-hydroxy-L-proline MOD:00039