Cryo-EM structure of the actomyosin-V complex in the rigor state (central 3er/2er)
Domain Annotation: SCOP2 Classification SCOP2 Database Homepage
Chains | Type | Family Name | Domain Identifier | Family Identifier | Provenance Source (Version) |
---|---|---|---|---|---|
A | SCOP2B Superfamily | Myosin s1 fragment, N-terminal domain | 8032925 | 3000319 | SCOP2B (2022-06-29) |
A | SCOP2B Superfamily | P-loop motor domain | 8032926 | 3002036 | SCOP2B (2022-06-29) |
E [auth D] | SCOP2B Superfamily | P-loop motor domain | 8032926 | 3002036 | SCOP2B (2022-06-29) |
E [auth D] | SCOP2B Superfamily | Myosin s1 fragment, N-terminal domain | 8032925 | 3000319 | SCOP2B (2022-06-29) |
B [auth C] | SCOP2B Superfamily | Actin-like ATPases | 8040509 | 3000092 | SCOP2B (2022-06-29) |
B [auth C] | SCOP2B Superfamily | Actin-like ATPases | 8040506 | 3000092 | SCOP2B (2022-06-29) |
F | SCOP2B Superfamily | Actin-like ATPases | 8040506 | 3000092 | SCOP2B (2022-06-29) |
F | SCOP2B Superfamily | Actin-like ATPases | 8040509 | 3000092 | SCOP2B (2022-06-29) |
I [auth G] | SCOP2B Superfamily | Actin-like ATPases | 8040506 | 3000092 | SCOP2B (2022-06-29) |
I [auth G] | SCOP2B Superfamily | Actin-like ATPases | 8040509 | 3000092 | SCOP2B (2022-06-29) |
D [auth B] | SCOP2B Superfamily | EF-hand | 8032927 | 3001983 | SCOP2B (2022-06-29) |
H [auth E] | SCOP2B Superfamily | EF-hand | 8032927 | 3001983 | SCOP2B (2022-06-29) |
Domain Annotation: ECOD Classification ECOD Database Homepage
Chains | Family Name | Domain Identifier | Architecture | Possible Homology | Homology | Topology | Family | Provenance Source (Version) |
---|---|---|---|---|---|---|---|---|
A | Myosin_N_1 | e7pluA2 | A: beta barrels | X: SH3 | H: SH3 | T: SH3 | F: Myosin_N_1 | ECOD (1.6) |
A | IQ_1 | e7pluA3 | A: alpha bundles | X: Myosin VI lever arm (From Topology) | H: Myosin VI lever arm (From Topology) | T: Myosin VI lever arm | F: IQ_1 | ECOD (1.6) |
A | Myosin_head | e7pluA1 | A: a/b three-layered sandwiches | X: P-loop domains-like | H: P-loop domains-related | T: P-loop containing nucleoside triphosphate hydrolases | F: Myosin_head | ECOD (1.6) |
E [auth D] | Myosin_N_1 | e7pluD2 | A: beta barrels | X: SH3 | H: SH3 | T: SH3 | F: Myosin_N_1 | ECOD (1.6) |
E [auth D] | IQ_1 | e7pluD3 | A: alpha bundles | X: Myosin VI lever arm (From Topology) | H: Myosin VI lever arm (From Topology) | T: Myosin VI lever arm | F: IQ_1 | ECOD (1.6) |
E [auth D] | Myosin_head | e7pluD1 | A: a/b three-layered sandwiches | X: P-loop domains-like | H: P-loop domains-related | T: P-loop containing nucleoside triphosphate hydrolases | F: Myosin_head | ECOD (1.6) |
B [auth C] | Actin_1st | e7pluC2 | A: mixed a+b and a/b | X: Ribonuclease H-like | H: Ribonuclease H-like (From Topology) | T: Ribonuclease H-like | F: Actin_1st | ECOD (1.6) |
B [auth C] | Actin_2nd | e7pluC1 | A: mixed a+b and a/b | X: Ribonuclease H-like | H: Ribonuclease H-like (From Topology) | T: Ribonuclease H-like | F: Actin_2nd | ECOD (1.6) |
F | Actin_1st | e7pluF2 | A: mixed a+b and a/b | X: Ribonuclease H-like | H: Ribonuclease H-like (From Topology) | T: Ribonuclease H-like | F: Actin_1st | ECOD (1.6) |
F | Actin_2nd | e7pluF1 | A: mixed a+b and a/b | X: Ribonuclease H-like | H: Ribonuclease H-like (From Topology) | T: Ribonuclease H-like | F: Actin_2nd | ECOD (1.6) |
I [auth G] | Actin_1st | e7pluG2 | A: mixed a+b and a/b | X: Ribonuclease H-like | H: Ribonuclease H-like (From Topology) | T: Ribonuclease H-like | F: Actin_1st | ECOD (1.6) |
I [auth G] | Actin_2nd | e7pluG1 | A: mixed a+b and a/b | X: Ribonuclease H-like | H: Ribonuclease H-like (From Topology) | T: Ribonuclease H-like | F: Actin_2nd | ECOD (1.6) |
D [auth B] | EF-hand_7_8 | e7pluB2 | A: alpha arrays | X: EF-hand | H: EF-hand-related | T: EF-hand | F: EF-hand_7_8 | ECOD (1.6) |
D [auth B] | EF-hand_7_5 | e7pluB1 | A: alpha arrays | X: EF-hand | H: EF-hand-related | T: EF-hand | F: EF-hand_7_5 | ECOD (1.6) |
H [auth E] | EF-hand_7_8 | e7pluE1 | A: alpha arrays | X: EF-hand | H: EF-hand-related | T: EF-hand | F: EF-hand_7_8 | ECOD (1.6) |
H [auth E] | EF-hand_7_5 | e7pluE2 | A: alpha arrays | X: EF-hand | H: EF-hand-related | T: EF-hand | F: EF-hand_7_5 | ECOD (1.6) |
Domain Annotation: CATH CATH Database Homepage
Chain | Domain | Class | Architecture | Topology | Homology | Provenance Source (Version) |
---|---|---|---|---|---|---|
A | 1.20.58.530 | Mainly Alpha | Up-down Bundle | Methane Monooxygenase Hydroxylase | Chain G, domain 1 | CATH (utative) |
E [auth D] | 1.20.58.530 | Mainly Alpha | Up-down Bundle | Methane Monooxygenase Hydroxylase | Chain G, domain 1 | CATH (utative) |
Protein Family Annotation Pfam Database Homepage
Chains | Accession | Name | Description | Comments | Source |
---|---|---|---|---|---|
A, E [auth D] | PF00612 | IQ calmodulin-binding motif (IQ) | IQ calmodulin-binding motif | - | Motif |
A, E [auth D] | PF00063 | Myosin head (motor domain) (Myosin_head) | Myosin head (motor domain) | Domain | |
Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage
InterPro: Protein Family Classification InterPro Database Homepage
Pharos: Disease Associations Pharos Homepage Annotation
Protein Modification Annotation
Modified Residue(s) | ||
---|---|---|
Chain | Residue(s) | Description |
B [auth C], F, I [auth G] | HIC | Parent Component: HIS :  AA0317 :  1'-methyl-L-histidine MOD:00322 |
C [auth H], G [auth I], J | DTH | AA0317 , AA0199 :  1'-methyl-L-histidine MOD:00322 , D-allo-threonine MOD:00863 | : 
C [auth H], G [auth I], J | EEP | AA0317 , AA0199 | : 
C [auth H], G [auth I], J | HYP | Parent Component: PRO :  AA0317 , AA0199 , AA0030 :  1'-methyl-L-histidine MOD:00322 , D-allo-threonine MOD:00863 , 4-hydroxy-L-proline MOD:00039 |