8RDU

Conformational Landscape of the Type V-K CRISPR-associated TransposonIntegration Assembly CAST V-K composite map

External Resource: Annotation

Protein Family Annotation
Gene Ontology: Gene Product Annotation
InterPro: Protein Family Classification

Protein Family Annotation Pfam Database Homepage

Chains	Accession	Name	Description	Comments	Source
I [auth B]	PF00312	Ribosomal protein S15 (Ribosomal_S15)	Ribosomal protein S15	-	Domain
J [auth C]	PF06527	TniQ (TniQ)	TniQ	-	Family
K [auth D], L [auth E], M [auth F], N [auth G], O [auth H], K [auth D], L [auth E], M [auth F], N [auth G], O [auth H], P [auth I], Q [auth J], R [auth K], S [auth L], T [auth M], U [auth N], V [auth O], W [auth P], X [auth Q]	PF05621	Bacterial TniB protein (TniB)	Bacterial TniB protein	This family consists of several bacterial TniB NTP-binding proteins. TniB is a probable ATP-binding protein [1] which is involved in Tn5053 mercury resistance transposition [2]. This entry represents a P-loop domain.	Domain
AA [auth T], BA [auth U], CA [auth r], DA [auth s], EA [auth t], AA [auth T], BA [auth U], CA [auth r], DA [auth s], EA [auth t], FA [auth u], Y [auth R], Z [auth S]	PF09299	Mu transposase, C-terminal (Mu-transpos_C)	Mu transposase, C-terminal	Members of this family are found in various prokaryotic integrases and transposases. They adopt a beta-barrel structure with Greek-key topology [1].	Domain
AA [auth T], BA [auth U], CA [auth r], DA [auth s], EA [auth t], AA [auth T], BA [auth U], CA [auth r], DA [auth s], EA [auth t], FA [auth u], Y [auth R], Z [auth S]	PF13384	Homeodomain-like domain (HTH_23)	Homeodomain-like domain	-	Domain

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

Chains	Polymer	Molecular Function	Biological Process	Cellular Component
A [auth 1]	sgRNA	-	-	-
B [auth 2]	Non-target strand - LE	-	-	-
C [auth 3]	Target strand -LE	-	-	-
D [auth 4]	LE	-	-	-
E [auth 5]	RE	-	-	-
F [auth 6]	Non-target strand - RE	-	-	-
G [auth 7]	Target strand	-	-	-
H [auth A]	ShCas12k	-	-	-
I [auth B]	Small ribosomal subunit protein uS15	structural molecule activity structural constituent of ribosome RNA binding binding organic cyclic compound binding rRNA binding nucleic acid binding	organonitrogen compound metabolic process cellular biosynthetic process cellular metabolic process organonitrogen compound biosynthetic process primary metabolic process translation gene expression macromolecule biosynthetic process biosynthetic process metabolic process cellular process protein metabolic process macromolecule metabolic process	cytosolic small ribosomal subunit protein-containing complex intracellular anatomical structure small ribosomal subunit cellular anatomical entity intracellular organelle ribosomal subunit cytosolic ribosome organelle ribonucleoprotein complex intracellular non-membrane-bounded organelle ribosome cytoplasm cytosol cytosolic small ribosomal subunit protein-containing complex intracellular anatomical structure small ribosomal subunit cellular anatomical entity intracellular organelle ribosomal subunit cytosolic ribosome organelle ribonucleoprotein complex intracellular non-membrane-bounded organelle ribosome cytoplasm cytosol non-membrane-bounded organelle
J [auth C]	TniQ	-	-	-
K [auth D], L [auth E], M [auth F], N [auth G], O [auth H], K [auth D], L [auth E], M [auth F], N [auth G], O [auth H], P [auth I], Q [auth J], R [auth K], S [auth L], T [auth M], U [auth N], V [auth O], W [auth P], X [auth Q]	ShTnsC	-	-	-
AA [auth T], BA [auth U], CA [auth r], DA [auth s], EA [auth t], AA [auth T], BA [auth U], CA [auth r], DA [auth s], EA [auth t], FA [auth u], Y [auth R], Z [auth S]	TnsB	binding organic cyclic compound binding nucleic acid binding	nucleobase-containing compound metabolic process metabolic process primary metabolic process DNA metabolic process macromolecule metabolic process DNA integration nucleic acid metabolic process	-

InterPro: Protein Family Classification InterPro Database Homepage

Chains	Accession	Name	Type
H [auth A]	IPR049868	Type V CRISPR-associated protein Cas12k	Family
I [auth B]	IPR005290	Small ribosomal subunit protein uS15, bacterial-type	Family
I [auth B]	IPR009068	uS15/NS1, RNA-binding domain superfamily	Homologous Superfamily
I [auth B]	IPR000589	Small ribosomal subunit protein uS15	Family
J [auth C]	IPR009492	TniQ	Family
K [auth D], L [auth E], M [auth F], N [auth G], O [auth H], K [auth D], L [auth E], M [auth F], N [auth G], O [auth H], P [auth I], Q [auth J], R [auth K], S [auth L], T [auth M], U [auth N], V [auth O], W [auth P], X [auth Q]	IPR008868	Bacterial TniB	Family
K [auth D], L [auth E], M [auth F], N [auth G], O [auth H], K [auth D], L [auth E], M [auth F], N [auth G], O [auth H], P [auth I], Q [auth J], R [auth K], S [auth L], T [auth M], U [auth N], V [auth O], W [auth P], X [auth Q]	IPR027417	P-loop containing nucleoside triphosphate hydrolase	Homologous Superfamily
AA [auth T], BA [auth U], CA [auth r], DA [auth s], EA [auth t], AA [auth T], BA [auth U], CA [auth r], DA [auth s], EA [auth t], FA [auth u], Y [auth R], Z [auth S]	IPR036397	Ribonuclease H superfamily	Homologous Superfamily
AA [auth T], BA [auth U], CA [auth r], DA [auth s], EA [auth t], AA [auth T], BA [auth U], CA [auth r], DA [auth s], EA [auth t], FA [auth u], Y [auth R], Z [auth S]	IPR009057	Homedomain-like superfamily	Homologous Superfamily
AA [auth T], BA [auth U], CA [auth r], DA [auth s], EA [auth t], AA [auth T], BA [auth U], CA [auth r], DA [auth s], EA [auth t], FA [auth u], Y [auth R], Z [auth S]	IPR009004	Transposase, Mu, C-terminal	Homologous Superfamily
AA [auth T], BA [auth U], CA [auth r], DA [auth s], EA [auth t], AA [auth T], BA [auth U], CA [auth r], DA [auth s], EA [auth t], FA [auth u], Y [auth R], Z [auth S]	IPR001584	Integrase, catalytic core	Domain
AA [auth T], BA [auth U], CA [auth r], DA [auth s], EA [auth t], AA [auth T], BA [auth U], CA [auth r], DA [auth s], EA [auth t], FA [auth u], Y [auth R], Z [auth S]	IPR012337	Ribonuclease H-like superfamily	Homologous Superfamily
AA [auth T], BA [auth U], CA [auth r], DA [auth s], EA [auth t], AA [auth T], BA [auth U], CA [auth r], DA [auth s], EA [auth t], FA [auth u], Y [auth R], Z [auth S]	IPR015378	Transposase-like, Mu, C-terminal	Domain

RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM133198.