8RDU

Conformational Landscape of the Type V-K CRISPR-associated TransposonIntegration Assembly CAST V-K composite map


Experimental Data Snapshot

  • Method: ELECTRON MICROSCOPY
  • Resolution: 2.30 Å
  • Aggregation State: PARTICLE 
  • Reconstruction Method: SINGLE PARTICLE 

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This is version 1.1 of the entry. See complete history


Literature

Conformational landscape of the type V-K CRISPR-associated transposon integration assembly.

Tenjo-Castano, F.Sofos, N.Stutzke, L.S.Temperini, P.Fuglsang, A.Pape, T.Mesa, P.Montoya, G.

(2024) Mol Cell 84: 2353

  • DOI: https://doi.org/10.1016/j.molcel.2024.05.005
  • Primary Citation of Related Structures:  
    8RDU, 8RKT, 8RKU, 8RKV

  • PubMed Abstract: 

    CRISPR-associated transposons (CASTs) are mobile genetic elements that co-opt CRISPR-Cas systems for RNA-guided DNA transposition. CASTs integrate large DNA cargos into the attachment (att) site independently of homology-directed repair and thus hold promise for eukaryotic genome engineering. However, the functional diversity and complexity of CASTs hinder an understanding of their mechanisms. Here, we present the high-resolution cryoelectron microscopy (cryo-EM) structure of the reconstituted ∼1 MDa post-transposition complex of the type V-K CAST, together with different assembly intermediates and diverse TnsC filament lengths, thus enabling the recapitulation of the integration complex formation. The results of mutagenesis experiments probing the roles of specific residues and TnsB-binding sites show that transposition activity can be enhanced and suggest that the distance between the PAM and att sites is determined by the lengths of the TnsB C terminus and the TnsC filament. This singular model of RNA-guided transposition provides a foundation for repurposing the system for genome-editing applications.


  • Organizational Affiliation

    Structural Molecular Biology Group, Novo Nordisk Foundation Centre for Protein Research, Faculty of Health and Medical Sciences, University of Copenhagen, Blegdamsvej 3B, 2200 Copenhagen, Denmark.


Macromolecules

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Entity ID: 8
MoleculeChains Sequence LengthOrganismDetailsImage
ShCas12kH [auth A]698Scytonema hofmanniiMutation(s): 0 
UniProt
Find proteins for A0A8X6EH11 (Scytonema hofmannii)
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Go to UniProtKB:  A0A8X6EH11
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UniProt GroupA0A8X6EH11
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Entity ID: 9
MoleculeChains Sequence LengthOrganismDetailsImage
Small ribosomal subunit protein uS15I [auth B]90Scytonema hofmanniiMutation(s): 10 
Gene Names: rpsOrps15WA1_22700
UniProt
Find proteins for A0A139X9A4 (Scytonema hofmannii PCC 7110)
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Go to UniProtKB:  A0A139X9A4
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UniProt GroupA0A139X9A4
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Entity ID: 10
MoleculeChains Sequence LengthOrganismDetailsImage
TniQJ [auth C]179Scytonema hofmanniiMutation(s): 0 
UniProt
Find proteins for A0A8J0PCL5 (Scytonema hofmannii)
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UniProt GroupA0A8J0PCL5
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Entity ID: 11
MoleculeChains Sequence LengthOrganismDetailsImage
ShTnsC276Scytonema hofmanniiMutation(s): 0 
UniProt
Find proteins for A0A8J0PCL3 (Scytonema hofmannii)
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UniProt GroupA0A8J0PCL3
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Entity ID: 12
MoleculeChains Sequence LengthOrganismDetailsImage
TnsB584Scytonema hofmanniiMutation(s): 0 
UniProt
Find proteins for A0A979HMQ2 ([Scytonema hofmanni] UTEX 2349)
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Go to UniProtKB:  A0A979HMQ2
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UniProt GroupA0A979HMQ2
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Entity ID: 1
MoleculeChains LengthOrganismImage
sgRNAA [auth 1]261Scytonema hofmannii
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Entity ID: 2
MoleculeChains LengthOrganismImage
Non-target strand - LEB [auth 2]68Scytonema hofmannii
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Entity ID: 3
MoleculeChains LengthOrganismImage
Target strand -LEC [auth 3]133Scytonema hofmannii
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Entity ID: 4
MoleculeChains LengthOrganismImage
LED [auth 4]75Scytonema hofmannii
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Entity ID: 5
MoleculeChains LengthOrganismImage
REE [auth 5]74Scytonema hofmannii
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Entity ID: 6
MoleculeChains LengthOrganismImage
Non-target strand - REF [auth 6]79Scytonema hofmannii
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Entity ID: 7
MoleculeChains LengthOrganismImage
Target strandG [auth 7]15Scytonema hofmannii
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Small Molecules
Ligands 3 Unique
IDChains Name / Formula / InChI Key2D Diagram3D Interactions
ATP (Subject of Investigation/LOI)
Query on ATP

Download Ideal Coordinates CCD File 
BB [auth M]
EB [auth N]
FB [auth O]
HB [auth P]
JA [auth D]
BB [auth M],
EB [auth N],
FB [auth O],
HB [auth P],
JA [auth D],
KB [auth Q],
LA [auth E],
NA [auth F],
PA [auth G],
RA [auth H],
TA [auth I],
VA [auth J],
XA [auth K],
ZA [auth L]
ADENOSINE-5'-TRIPHOSPHATE
C10 H16 N5 O13 P3
ZKHQWZAMYRWXGA-KQYNXXCUSA-N
ZN
Query on ZN

Download Ideal Coordinates CCD File 
HA [auth C],
IA [auth C]
ZINC ION
Zn
PTFCDOFLOPIGGS-UHFFFAOYSA-N
MG (Subject of Investigation/LOI)
Query on MG

Download Ideal Coordinates CCD File 
AB [auth L]
CB [auth M]
DB [auth N]
GA [auth 1]
GB [auth O]
AB [auth L],
CB [auth M],
DB [auth N],
GA [auth 1],
GB [auth O],
IB [auth P],
JB [auth Q],
KA [auth D],
LB [auth R],
MA [auth E],
MB [auth S],
OA [auth F],
QA [auth G],
SA [auth H],
UA [auth I],
WA [auth J],
YA [auth K]
MAGNESIUM ION
Mg
JLVVSXFLKOJNIY-UHFFFAOYSA-N
Experimental Data & Validation

Experimental Data

  • Method: ELECTRON MICROSCOPY
  • Resolution: 2.30 Å
  • Aggregation State: PARTICLE 
  • Reconstruction Method: SINGLE PARTICLE 
EM Software:
TaskSoftware PackageVersion
RECONSTRUCTIONcryoSPARC4.4
MODEL REFINEMENTPHENIX
MODEL REFINEMENTISOLDE
MODEL REFINEMENTCoot

Structure Validation

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Entry History & Funding Information

Deposition Data


Funding OrganizationLocationGrant Number
Novo Nordisk FoundationDenmarkNNF14CC0001
European Research Council (ERC)European Union101096548

Revision History  (Full details and data files)

  • Version 1.0: 2024-06-19
    Type: Initial release
  • Version 1.1: 2024-07-03
    Changes: Data collection, Database references