8ZZ2 | pdb_00008zz2

Structure of Saccharomyces cerevisiae exosome determined with CX-MS


Integrative Structure Snapshot

  • Multi-Scale: Yes 
  • Multi-State: Yes 
  • Ordered-State: No 
  • Deposited Models: 4 
  • Representative Model: 1 

This is version 1.0 of the entry. See complete history


Literature

A strategy for dissecting the architectures of native macromolecular assemblies.

Shi, Y.Pellarin, R.Fridy, P.C.Fernandez-Martinez, J.Thompson, M.K.Li, Y.Wang, Q.J.Sali, A.Rout, M.P.Chait, B.T.

(2015) Nat Methods 12: 1135-1138

  • DOI: https://doi.org/10.1038/nmeth.3617
  • Primary Citation of Related Structures:  
    8ZZ2

  • PubMed Abstract: 

    It remains particularly problematic to define the structures of native macromolecular assemblies, which are often of low abundance. Here we present a strategy for isolating complexes at endogenous levels from GFP-tagged transgenic cell lines. Using cross-linking mass spectrometry, we extracted distance restraints that allowed us to model the complexes' molecular architectures.


  • Organizational Affiliation
    • Laboratory of Mass Spectrometry and Gaseous Ion Chemistry, The Rockefeller University, New York, New York, USA.

Macromolecules
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Entity ID: 1
MoleculeChains Sequence LengthOrganismDetailsImage
Dis31,001Saccharomyces cerevisiae (strain ATCC 204508 / S288c)Mutation(s): 0 
Gene Names: DIS3
EC: 3.1.13 (UniProt), 3.1.26 (UniProt)
UniProt
Find proteins for Q08162 (Saccharomyces cerevisiae (strain ATCC 204508 / S288c))
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Entity ID: 2
MoleculeChains Sequence LengthOrganismDetailsImage
Rrp45305Saccharomyces cerevisiae (strain ATCC 204508 / S288c)Mutation(s): 0 
Gene Names: RRP45
UniProt
Find proteins for Q05636 (Saccharomyces cerevisiae (strain ATCC 204508 / S288c))
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Entity ID: 3
MoleculeChains Sequence LengthOrganismDetailsImage
Rrp4359Saccharomyces cerevisiae (strain ATCC 204508 / S288c)Mutation(s): 0 
Gene Names: RRP4
UniProt
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Entity ID: 4
MoleculeChains Sequence LengthOrganismDetailsImage
Csl4292Saccharomyces cerevisiae (strain ATCC 204508 / S288c)Mutation(s): 0 
Gene Names: CSL4
UniProt
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Entity ID: 5
MoleculeChains Sequence LengthOrganismDetailsImage
Mtr3250Saccharomyces cerevisiae (strain ATCC 204508 / S288c)Mutation(s): 0 
Gene Names: MTR3
UniProt
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Entity ID: 6
MoleculeChains Sequence LengthOrganismDetailsImage
Rrp40240Saccharomyces cerevisiae (strain ATCC 204508 / S288c)Mutation(s): 0 
Gene Names: RRP40
UniProt
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Entity ID: 7
MoleculeChains Sequence LengthOrganismDetailsImage
Rrp42265Saccharomyces cerevisiae (strain ATCC 204508 / S288c)Mutation(s): 0 
Gene Names: RRP42
UniProt
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Entity ID: 8
MoleculeChains Sequence LengthOrganismDetailsImage
Ski6265Saccharomyces cerevisiae (strain ATCC 204508 / S288c)Mutation(s): 0 
Gene Names: SKI6
UniProt
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Entity ID: 9
MoleculeChains Sequence LengthOrganismDetailsImage
Rrp46_gfp475Saccharomyces cerevisiae (strain ATCC 204508 / S288c)Mutation(s): 0 
Gene Names: RRP46
UniProt
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Entity ID: 10
MoleculeChains Sequence LengthOrganismDetailsImage
Rrp43394Saccharomyces cerevisiae (strain ATCC 204508 / S288c)Mutation(s): 0 
Gene Names: RRP43
UniProt
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Entity ID: 11
MoleculeChains Sequence LengthOrganismDetailsImage
Lrp1184Saccharomyces cerevisiae (strain ATCC 204508 / S288c)Mutation(s): 0 
Gene Names: LRP1
UniProt
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Entity ID: 12
MoleculeChains Sequence LengthOrganismDetailsImage
Rrp6733Saccharomyces cerevisiae (strain ATCC 204508 / S288c)Mutation(s): 0 
Gene Names: RRP6
EC: 3.1.13
UniProt
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Entity ID: 13
MoleculeChains Sequence LengthOrganismDetailsImage
MPP6186Saccharomyces cerevisiae (strain ATCC 204508 / S288c)Mutation(s): 0 
Gene Names: MPP6
UniProt
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Experimental Data & Validation

Integrative Structure Snapshot

  • Multi-Scale: Yes 
  • Multi-State: Yes 
  • Ordered-State: No 
  • Deposited Models: 4 
  • Representative Model: 1 

Structure Validation

View Full Validation Report

View Summary Validation Report



Entry History 

Deposition Data

Revision History  (Full details and data files)

  • Version 1.0: 2016-08-31
    Type: Initial release