9GFO | pdb_00009gfo

iASPP-CTD fusion to p63 peptide


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.40 Å
  • R-Value Free: 
    0.280 (Depositor), 0.278 (DCC) 
  • R-Value Work: 
    0.243 (Depositor), 0.243 (DCC) 

Starting Model: experimental
View more details

wwPDB Validation   3D Report Full Report


This is version 1.1 of the entry. See complete history


Literature

Alternative splicing in the DBD linker region of p63 modulates binding to DNA and iASPP in vitro.

Lotz, R.Osterburg, C.Chaikuad, A.Weber, S.Akutsu, M.Machel, A.C.Beyer, U.Gebel, J.Lohr, F.Knapp, S.Dobbelstein, M.Lu, X.Dotsch, V.

(2025) Cell Death Dis 16: 4-4

  • DOI: https://doi.org/10.1038/s41419-024-07320-2
  • Primary Citation of Related Structures:  
    9GFO

  • PubMed Abstract: 

    The transcription factor p63 is expressed in many different isoforms as a result of differential promoter use and splicing. Some of these isoforms have very specific physiological functions in the development and maintenance of epithelial tissues and surveillance of genetic integrity in oocytes. The ASPP family of proteins is involved in modulating the transcriptional activity of the p53 protein family members, including p63. In particular, iASPP plays an important role in the development and differentiation of epithelial tissues. Here we characterize the interaction of iASPP with p63 and show that it binds to the linker region between the DNA binding domain and the oligomerization domain. We further demonstrate that this binding site is removed in a splice variant of p63 where a stretch of five amino acids is replaced with a single alanine residue. This stretch contains a degenerate class II SH3 domain binding motif that is responsible for interaction with iASPP, as well as two positively charged amino acids. Moreover, the concomitant loss of the charged amino acids in the alternatively spliced version decreases the affinity of p63 to its cognate DNA element two- to threefold. mRNAs encoding full-length p63, as well as its alternatively spliced version, are present in all tissues that we investigated, albeit in differing ratios. We speculate that, through the formation of hetero-complexes of both isoforms, the affinity to DNA, as well as the interaction with iASPP, can be fine-tuned in a tissue-specific manner.


  • Organizational Affiliation
    • Institute of Biophysical Chemistry and Center for Biomolecular Magnetic Resonance, Goethe University, 60438, Frankfurt, Germany.

Macromolecules
Find similar proteins by:  (by identity cutoff)  |  3D Structure
Entity ID: 1
MoleculeChains Sequence LengthOrganismDetailsImage
Tumor protein 63,RelA-associated inhibitorA [auth AAA],
B [auth BBB],
C [auth CCC],
D [auth DDD]
210Homo sapiensMutation(s): 0 
Gene Names: 
UniProt & NIH Common Fund Data Resources
Find proteins for Q8WUF5 (Homo sapiens)
Explore Q8WUF5 
Go to UniProtKB:  Q8WUF5
PHAROS:  Q8WUF5
GTEx:  ENSG00000104881 
Find proteins for Q9H3D4 (Homo sapiens)
Explore Q9H3D4 
Go to UniProtKB:  Q9H3D4
PHAROS:  Q9H3D4
GTEx:  ENSG00000073282 
Entity Groups  
Sequence Clusters30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt GroupsQ9H3D4Q8WUF5
Sequence Annotations
Expand
  • Reference Sequence
Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.40 Å
  • R-Value Free:  0.280 (Depositor), 0.278 (DCC) 
  • R-Value Work:  0.243 (Depositor), 0.243 (DCC) 
Space Group: P 2 21 2
Unit Cell:
Length ( Å )Angle ( ˚ )
a = 77.119α = 90
b = 94.12β = 90
c = 179.314γ = 90
Software Package:
Software NamePurpose
REFMACrefinement
XDSdata reduction
SCALAdata scaling
PHASERphasing

Structure Validation

View Full Validation Report



Entry History & Funding Information

Deposition Data


Funding OrganizationLocationGrant Number
German Research Foundation (DFG)GermanyDO 545/18-1
German Research Foundation (DFG)GermanyDO 545/20-1

Revision History  (Full details and data files)

  • Version 1.0: 2024-12-18
    Type: Initial release
  • Version 1.1: 2025-01-22
    Changes: Database references