9HES | pdb_00009hes

Structure of the Arabidopsis thaliana 80S ribosome OVAC mutant in complex with P- and E-site tRNAs, mRNA, and thermospermine

  • Classification: RIBOSOME
  • Organism(s): Arabidopsis thaliana
  • Mutation(s): No 

  • Deposited: 2024-11-14 Released: 2026-02-04 
  • Deposition Author(s): Faille, A., Warren, A.J.
  • Funding Organization(s): Gatsby Charitable Foundation, Biotechnology and Biological Sciences Research Council (BBSRC), European Research Council (ERC)

Experimental Data Snapshot

  • Method: ELECTRON MICROSCOPY
  • Resolution: 2.25 Å
  • Aggregation State: PARTICLE 
  • Reconstruction Method: SINGLE PARTICLE 

wwPDB Validation   3D Report Full Report


This is version 1.1 of the entry. See complete history


Literature

Recruitment of bifunctional regulator thermospermine to methylated ribosomes directs xylem fate.

Ko, D.Ruonala, R.Faille, A.Hellmann, E.Help, H.Liu, H.Nielsen, R.Haakonsson, A.De Diego, N.Paatero, A.Shcherbii, M.V.Stefanowicz, K.Cavar Zeljkovic, S.Drud Lundager Rasmussen, T.Novak, O.Bodi, Z.Eswaran, G.Wybouw, B.Bourdon, M.Urbez, C.Liu, X.Salokas, K.Ohman, T.Waldie, T.Toronen, P.El-Showk, S.Balcerowicz, M.Besnard, F.Liu, X.Perkins, P.Mazzoni-Putman, S.Vainonen, J.P.Sierla, M.Frilander, M.J.Mandrup, S.Vernoux, T.Ljung, K.Ferrando, A.Blazquez, M.A.Holm, L.Fray, R.Varjosalo, M.Leyser, O.Paavilainen, V.O.Mahonen, A.P.Stepanova, A.Alonso, J.Heber, S.Malinowski, R.Kirpekar, F.Warren, A.J.Helariutta, Y.

(2026) Science 391: 694-699

  • DOI: https://doi.org/10.1126/science.adx2867
  • Primary Citation of Related Structures:  
    9H3G, 9H6I, 9HES, 9HMW

  • PubMed Abstract: 

    Polyamines are often associated with ribosomes and are thought to stabilize their integrity. In Arabidopsis , the polyamine thermospermine (tSpm) affects xylem cell fate. tSpm induces translation of SUPPRESSOR-OF-ACAULIS51 (SAC51) and SAC51-LIKEs (SACLs), which inhibit heterodimerization of the xylem development proteins LONESOME-HIGHWAY (LHW) and TARGET-OF-MONOPTEROS5. Here, we report a methyltransferase, OVERACHIEVER, that methylates the peptidyl transferase center of the 25 S ribosomal RNA (rRNA). Residue m 3 U2952 promotes functional tSpm binding to a specific site connecting the P-site transfer RNA (tRNA) with rRNA residues in the peptidyl transferase center. This interaction enhances the translation of SACLs but inhibits that of LHW. Our study uncovers the dependency between a conserved rRNA base methylation and a polyamine in orchestrating cell fate decisions, highlighting a role for the ribosome chemical landscape in translational regulation.


  • Organizational Affiliation
    • Organismal and Evolutionary Biology Research Programme, Faculty of Biological and Environmental Sciences, University of Helsinki, Helsinki, Finland.

Macromolecules

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Entity ID: 5
MoleculeChains Sequence LengthOrganismDetailsImage
Small ribosomal subunit protein eS32 eS32z/eS32y/eS32x/eS32w/eS32vE [auth BC]25Arabidopsis thalianaMutation(s): 0 
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Entity ID: 6
MoleculeChains Sequence LengthOrganismDetailsImage
Large ribosomal subunit protein uL22zF [auth BM]176Arabidopsis thalianaMutation(s): 0 
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Find proteins for Q93VI3 (Arabidopsis thaliana)
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Entity ID: 7
MoleculeChains Sequence LengthOrganismDetailsImage
Large ribosomal subunit protein uL24zG [auth BO]146Arabidopsis thalianaMutation(s): 0 
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Entity ID: 8
MoleculeChains Sequence LengthOrganismDetailsImage
60S ribosomal protein L29H [auth AR]83Arabidopsis thalianaMutation(s): 0 
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Entity ID: 9
MoleculeChains Sequence LengthOrganismDetailsImage
Large ribosomal subunit protein eL31yI [auth AU]119Arabidopsis thalianaMutation(s): 0 
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Entity ID: 10
MoleculeChains Sequence LengthOrganismDetailsImage
Small ribosomal subunit protein eS26yJ [auth Ma]131Arabidopsis thalianaMutation(s): 0 
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Entity ID: 11
MoleculeChains Sequence LengthOrganismDetailsImage
Large ribosomal subunit protein uL6z/uL6yK [auth Ia]194Arabidopsis thalianaMutation(s): 0 
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Entity ID: 12
MoleculeChains Sequence LengthOrganismDetailsImage
Small ribosomal subunit protein uS8z/uS8wL [auth AE]130Arabidopsis thalianaMutation(s): 0 
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Entity ID: 13
MoleculeChains Sequence LengthOrganismDetailsImage
Large ribosomal subunit protein eL36yM [auth AX]112Arabidopsis thalianaMutation(s): 0 
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Entity ID: 14
MoleculeChains Sequence LengthOrganismDetailsImage
Large ribosomal subunit protein eL27xN [auth AP]135Arabidopsis thalianaMutation(s): 0 
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Entity ID: 15
MoleculeChains Sequence LengthOrganismDetailsImage
Small ribosomal subunit protein eS4xO [auth Ja]262Arabidopsis thalianaMutation(s): 0 
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Entity ID: 16
MoleculeChains Sequence LengthOrganismDetailsImage
Large ribosomal subunit protein eL15zP [auth Ea]204Arabidopsis thalianaMutation(s): 0 
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Entity ID: 17
MoleculeChains Sequence LengthOrganismDetailsImage
Ribosomal protein L18ae/LX family proteinQ [auth AL]217Arabidopsis thalianaMutation(s): 0 
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Entity ID: 18
MoleculeChains Sequence LengthOrganismDetailsImage
Small ribosomal subunit protein uS12yR [auth Va]142Arabidopsis thalianaMutation(s): 0 
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Entity ID: 19
MoleculeChains Sequence LengthOrganismDetailsImage
Small ribosomal subunit protein eS24yS [auth Ka]133Arabidopsis thalianaMutation(s): 0 
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Entity ID: 20
MoleculeChains Sequence LengthOrganismDetailsImage
Large ribosomal subunit protein eL33yT [auth AW]112Arabidopsis thalianaMutation(s): 0 
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Entity ID: 21
MoleculeChains Sequence LengthOrganismDetailsImage
Large ribosomal subunit protein eL42z/eL42yU [auth BD]105Arabidopsis thalianaMutation(s): 0 
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Entity ID: 22
MoleculeChains Sequence LengthOrganismDetailsImage
Large ribosomal subunit protein uL3zV [auth BS]389Arabidopsis thalianaMutation(s): 0 
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Entity ID: 23
MoleculeChains Sequence LengthOrganismDetailsImage
Large ribosomal subunit protein eL21z/eL21yW [auth AM]164Arabidopsis thalianaMutation(s): 0 
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Entity ID: 24
MoleculeChains Sequence LengthOrganismDetailsImage
Small ribosomal subunit protein uS5y/uS5u/uS5vX [auth AC]284Arabidopsis thalianaMutation(s): 0 
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Entity ID: 25
MoleculeChains Sequence LengthOrganismDetailsImage
Large ribosomal subunit protein uL14x/uL14z/uL14yY [auth BI]140Arabidopsis thalianaMutation(s): 0 
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Entity ID: 26
MoleculeChains Sequence LengthOrganismDetailsImage
Large ribosomal subunit protein eL14yZ [auth AH]134Arabidopsis thalianaMutation(s): 0 
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Entity ID: 27
MoleculeChains Sequence LengthOrganismDetailsImage
Large ribosomal subunit protein uL4zAA [auth BT]406Arabidopsis thalianaMutation(s): 0 
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Entity ID: 28
MoleculeChains Sequence LengthOrganismDetailsImage
Large ribosomal subunit protein eL32zBA [auth AV]133Arabidopsis thalianaMutation(s): 0 
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Entity ID: 29
MoleculeChains Sequence LengthOrganismDetailsImage
Small ribosomal subunit protein uS7yCA [auth AD]207Arabidopsis thalianaMutation(s): 0 
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Entity ID: 30
MoleculeChains Sequence LengthOrganismDetailsImage
Large ribosomal subunit protein eL18xDA [auth AJ]187Arabidopsis thalianaMutation(s): 0 
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Find proteins for Q940B0 (Arabidopsis thaliana)
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Entity ID: 31
MoleculeChains Sequence LengthOrganismDetailsImage
Large ribosomal subunit protein uL2zEA [auth BQ]258Arabidopsis thalianaMutation(s): 0 
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Entity ID: 32
MoleculeChains Sequence LengthOrganismDetailsImage
Large ribosomal subunit protein uL13yFA [auth BH]206Arabidopsis thalianaMutation(s): 0 
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Entity ID: 33
MoleculeChains Sequence LengthOrganismDetailsImage
Small ribosomal subunit protein uS15yGA [auth Da]151Arabidopsis thalianaMutation(s): 0 
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Entity ID: 34
MoleculeChains Sequence LengthOrganismDetailsImage
Large ribosomal subunit protein uL18zHA [auth BK]301Arabidopsis thalianaMutation(s): 0 
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Entity ID: 35
MoleculeChains Sequence LengthOrganismDetailsImage
Large ribosomal subunit protein eL30yIA [auth AT]112Arabidopsis thalianaMutation(s): 0 
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Entity ID: 36
MoleculeChains Sequence LengthOrganismDetailsImage
Small ribosomal subunit protein eS30z/eS30y/eS30xJA [auth Pa]62Arabidopsis thalianaMutation(s): 0 
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Entity ID: 37
MoleculeChains Sequence LengthOrganismDetailsImage
Large ribosomal subunit protein uL29xKA [auth BP]123Arabidopsis thalianaMutation(s): 0 
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Find proteins for Q9M3D2 (Arabidopsis thaliana)
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Entity ID: 38
MoleculeChains Sequence LengthOrganismDetailsImage
Large ribosomal subunit protein uL23yLA [auth BN]154Arabidopsis thalianaMutation(s): 0 
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Entity ID: 39
MoleculeChains Sequence LengthOrganismDetailsImage
Large ribosomal subunit protein eL8yMA [auth BG]256Arabidopsis thalianaMutation(s): 0 
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Entity ID: 40
MoleculeChains Sequence LengthOrganismDetailsImage
Large ribosomal subunit protein eL34zNA [auth Fa]120Arabidopsis thalianaMutation(s): 0 
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Entity ID: 41
MoleculeChains Sequence LengthOrganismDetailsImage
Large ribosomal subunit protein uL15xOA [auth Ha]146Arabidopsis thalianaMutation(s): 0 
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Entity ID: 42
MoleculeChains Sequence LengthOrganismDetailsImage
Large ribosomal subunit protein uL5zPA [auth BU]182Arabidopsis thalianaMutation(s): 0 
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Entity ID: 43
MoleculeChains Sequence LengthOrganismDetailsImage
Ribosomal protein L30/L7 family proteinQA [auth BR]247Arabidopsis thalianaMutation(s): 0 
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Entity ID: 44
MoleculeChains Sequence LengthOrganismDetailsImage
Small ribosomal subunit protein uS17zRA [auth Xa]160Arabidopsis thalianaMutation(s): 0 
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Entity ID: 45
MoleculeChains Sequence LengthOrganismDetailsImage
Small ribosomal subunit protein eS1ySA [auth BV]262Arabidopsis thalianaMutation(s): 0 
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Entity ID: 46
MoleculeChains Sequence LengthOrganismDetailsImage
Large ribosomal subunit protein uL16yTA [auth BJ]221Arabidopsis thalianaMutation(s): 0 
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Entity ID: 47
MoleculeChains Sequence LengthOrganismDetailsImage
Large ribosomal subunit protein eL24zUA [auth AO]164Arabidopsis thalianaMutation(s): 0 
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Entity ID: 48
MoleculeChains Sequence LengthOrganismDetailsImage
Small ribosomal subunit protein eS21yVA [auth BW]82Arabidopsis thalianaMutation(s): 0 
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Entity ID: 49
MoleculeChains Sequence LengthOrganismDetailsImage
Large ribosomal subunit protein eL19xWA [auth AK]214Arabidopsis thalianaMutation(s): 0 
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UniProt GroupQ9SRX2
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Entity ID: 50
MoleculeChains Sequence LengthOrganismDetailsImage
Small ribosomal subunit protein eS27yXA [auth Na]86Arabidopsis thalianaMutation(s): 0 
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Entity ID: 51
MoleculeChains Sequence LengthOrganismDetailsImage
Small ribosomal subunit protein uS4yYA [auth AB]197Arabidopsis thalianaMutation(s): 0 
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Entity ID: 52
MoleculeChains Sequence LengthOrganismDetailsImage
Large ribosomal subunit protein eL6yZA [auth BF]233Arabidopsis thalianaMutation(s): 0 
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Entity ID: 53
MoleculeChains Sequence LengthOrganismDetailsImage
Small ribosomal subunit protein uS3zAB [auth AA]250Arabidopsis thalianaMutation(s): 0 
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Entity ID: 54
MoleculeChains Sequence LengthOrganismDetailsImage
Large ribosomal subunit protein eL13zBB [auth AG]206Arabidopsis thalianaMutation(s): 0 
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Entity ID: 55
MoleculeChains Sequence LengthOrganismDetailsImage
Ubiquitin-ribosomal protein eL40z fusion proteinCB [auth Ga]128Arabidopsis thalianaMutation(s): 0 
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Entity ID: 56
MoleculeChains Sequence LengthOrganismDetailsImage
Large ribosomal subunit protein eL39z/eL39xDB [auth BA]51Arabidopsis thalianaMutation(s): 0 
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Entity ID: 57
MoleculeChains Sequence LengthOrganismDetailsImage
Small ribosomal subunit protein uS9zEB [auth AF]146Arabidopsis thalianaMutation(s): 0 
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Entity ID: 58
MoleculeChains Sequence LengthOrganismDetailsImage
Small ribosomal subunit protein uS13z/uS13y/uS13xFB [auth Wa]152Arabidopsis thalianaMutation(s): 0 
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Entity ID: 59
MoleculeChains Sequence LengthOrganismDetailsImage
Small ribosomal subunit protein eS6yGB [auth Ta]249Arabidopsis thalianaMutation(s): 0 
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Entity ID: 60
MoleculeChains Sequence LengthOrganismDetailsImage
Large ribosomal subunit protein eL38z/eL38yHB [auth AZ]69Arabidopsis thalianaMutation(s): 0 
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Entity ID: 61
MoleculeChains Sequence LengthOrganismDetailsImage
Large ribosomal subunit protein eL43yIB [auth BE]92Arabidopsis thalianaMutation(s): 0 
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Entity ID: 62
MoleculeChains Sequence LengthOrganismDetailsImage
Small ribosomal subunit protein uS2zJB [auth Za]298Arabidopsis thalianaMutation(s): 0 
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Entity ID: 63
MoleculeChains Sequence LengthOrganismDetailsImage
Large ribosomal subunit protein eL28zKB [auth AQ]143Arabidopsis thalianaMutation(s): 0 
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Entity ID: 64
MoleculeChains Sequence LengthOrganismDetailsImage
Small ribosomal subunit protein eS28xLB [auth Oa]64Arabidopsis thalianaMutation(s): 0 
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Entity ID: 65
MoleculeChains Sequence LengthOrganismDetailsImage
Small ribosomal subunit protein uS11yMB [auth Ua]150Arabidopsis thalianaMutation(s): 0 
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Entity ID: 66
MoleculeChains Sequence LengthOrganismDetailsImage
Small ribosomal subunit protein uS19yNB [auth Ya]150Arabidopsis thalianaMutation(s): 0 
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Entity ID: 67
MoleculeChains Sequence LengthOrganismDetailsImage
Small ribosomal subunit protein eS17wOB [auth BB]141Arabidopsis thalianaMutation(s): 0 
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Entity ID: 68
MoleculeChains Sequence LengthOrganismDetailsImage
Large ribosomal subunit protein eL22zPB [auth AN]124Arabidopsis thalianaMutation(s): 0 
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Entity ID: 69
MoleculeChains Sequence LengthOrganismDetailsImage
Small ribosomal subunit protein eS7xQB [auth Ra]190Arabidopsis thalianaMutation(s): 0 
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Entity ID: 70
MoleculeChains Sequence LengthOrganismDetailsImage
Small ribosomal subunit protein eS19xRB [auth BL]143Arabidopsis thalianaMutation(s): 0 
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Entity ID: 71
MoleculeChains Sequence LengthOrganismDetailsImage
Small ribosomal subunit protein eS25wSB [auth La]108Arabidopsis thalianaMutation(s): 0 
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Entity ID: 72
MoleculeChains Sequence LengthOrganismDetailsImage
Small ribosomal subunit protein eS8zTB [auth Aa]222Arabidopsis thalianaMutation(s): 0 
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Entity ID: 73
MoleculeChains Sequence LengthOrganismDetailsImage
Large ribosomal subunit protein eL37zUB [auth AY]95Arabidopsis thalianaMutation(s): 0 
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Entity ID: 74
MoleculeChains Sequence LengthOrganismDetailsImage
Small ribosomal subunit protein uS14z/uS14y/uS14xVB [auth Ca]56Arabidopsis thalianaMutation(s): 0 
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Entity ID: 77
MoleculeChains Sequence LengthOrganismDetailsImage
Small ribosomal subunit protein uS10yZB [auth Ba]122Arabidopsis thalianaMutation(s): 0 
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Entity ID: 78
MoleculeChains Sequence LengthOrganismDetailsImage
Small ribosomal subunit protein eS10zAC [auth AI]177Arabidopsis thalianaMutation(s): 0 
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Entity ID: 79
MoleculeChains Sequence LengthOrganismDetailsImage
Nascent polypeptideBC [auth L3]23Arabidopsis thalianaMutation(s): 0 
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Entity ID: 1
MoleculeChains LengthOrganismImage
Ribosomal RNA 5.8SA [auth 3]164Arabidopsis thaliana
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Entity ID: 2
MoleculeChains LengthOrganismImage
Ribosomal RNA 25SB [auth A]3,385Arabidopsis thaliana
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Entity ID: 3
MoleculeChains LengthOrganismImage
Transfer RNA Phe GAAC [auth 2],
YB [auth W2]
76Arabidopsis thaliana
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Entity ID: 4
MoleculeChains LengthOrganismImage
Ribosomal RNA 5SD [auth C3]121Arabidopsis thaliana
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Entity ID: 75
MoleculeChains LengthOrganismImage
Ribosomal RNA 18SWB [auth h1]1,805Arabidopsis thaliana
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Entity ID: 76
MoleculeChains LengthOrganismImage
Messenger RNAXB [auth B1]12Arabidopsis thaliana
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Small Molecules
Ligands 6 Unique
IDChains Name / Formula / InChI Key2D Diagram3D Interactions
EPE
Query on EPE

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MC [auth A]4-(2-HYDROXYETHYL)-1-PIPERAZINE ETHANESULFONIC ACID
C8 H18 N2 O4 S
JKMHFZQWWAIEOD-UHFFFAOYSA-N
TER (Subject of Investigation/LOI)
Query on TER

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AD [auth A]
AR [auth h1]
BD [auth A]
BR [auth h1]
CC [auth 3]
AD [auth A],
AR [auth h1],
BD [auth A],
BR [auth h1],
CC [auth 3],
CD [auth A],
CR [auth h1],
DC [auth 3],
DD [auth A],
DR [auth h1],
ED [auth A],
ER [auth h1],
FD [auth A],
NC [auth A],
OC [auth A],
PC [auth A],
QC [auth A],
RC [auth A],
SC [auth A],
TC [auth A],
UC [auth A],
VC [auth A],
WC [auth A],
XC [auth A],
YC [auth A],
ZC [auth A],
ZQ [auth h1]
N-(3-AMINO-PROPYL)-N-(5-AMINOPROPYL)-1,4-DIAMINOBUTANE
C10 H26 N4
DODDBCGMRAFLEB-UHFFFAOYSA-N
SPD
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LC [auth A]SPERMIDINE
C7 H19 N3
ATHGHQPFGPMSJY-UHFFFAOYSA-N
ZN
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OQ [auth Ga]
SP [auth Ma]
SQ [auth BE]
UQ [auth AY]
VP [auth BD]
OQ [auth Ga],
SP [auth Ma],
SQ [auth BE],
UQ [auth AY],
VP [auth BD],
XQ [auth Ca]
ZINC ION
Zn
PTFCDOFLOPIGGS-UHFFFAOYSA-N
K
Query on K

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AL [auth A]
AM [auth A]
AN [auth A]
AO [auth A]
AP [auth A]
AL [auth A],
AM [auth A],
AN [auth A],
AO [auth A],
AP [auth A],
AQ [auth BS],
AV [auth h1],
BL [auth A],
BM [auth A],
BN [auth A],
BO [auth A],
BP [auth A],
BV [auth h1],
CL [auth A],
CM [auth A],
CN [auth A],
CO [auth A],
CP [auth A],
CV [auth h1],
DL [auth A],
DM [auth A],
DN [auth A],
DO [auth A],
DP [auth A],
DQ [auth AV],
DV [auth h1],
EL [auth A],
EM [auth A],
EN [auth A],
EO [auth A],
EP [auth A],
EQ [auth AD],
EU [auth h1],
EV [auth h1],
FL [auth A],
FM [auth A],
FN [auth A],
FO [auth A],
FP [auth A],
FQ [auth AJ],
FU [auth h1],
FV [auth h1],
GL [auth A],
GM [auth A],
GN [auth A],
GO [auth A],
GP [auth A],
GQ [auth BQ],
GU [auth h1],
GV [auth h1],
HL [auth A],
HM [auth A],
HN [auth A],
HO [auth A],
HP [auth A],
HQ [auth BQ],
HU [auth h1],
HV [auth h1],
IC [auth 3],
IL [auth A],
IM [auth A],
IN [auth A],
IO [auth A],
IP [auth A],
IQ [auth Fa],
IU [auth h1],
IV [auth h1],
JC [auth 3],
JL [auth A],
JM [auth A],
JN [auth A],
JO [auth A],
JU [auth h1],
JV [auth h1],
KC [auth 3],
KL [auth A],
KM [auth A],
KN [auth A],
KO [auth A],
KU [auth h1],
KV [auth h1],
LL [auth A],
LM [auth A],
LN [auth A],
LO [auth A],
LQ [auth BJ],
LU [auth h1],
LV [auth h1],
ML [auth A],
MM [auth A],
MN [auth A],
MO [auth A],
MQ [auth AG],
MU [auth h1],
MV [auth h1],
NL [auth A],
NM [auth A],
NN [auth A],
NO [auth A],
NP [auth C3],
NQ [auth AG],
NU [auth h1],
NV [auth h1],
OL [auth A],
OM [auth A],
ON [auth A],
OO [auth A],
OU [auth h1],
OV [auth h1],
PL [auth A],
PM [auth A],
PN [auth A],
PO [auth A],
PP [auth BM],
PU [auth h1],
PV [auth h1],
QL [auth A],
QM [auth A],
QN [auth A],
QO [auth A],
QP [auth BM],
QQ [auth Wa],
QU [auth h1],
QV [auth h1],
RK [auth A],
RL [auth A],
RM [auth A],
RN [auth A],
RO [auth A],
RP [auth AR],
RU [auth h1],
RV [auth h1],
SK [auth A],
SL [auth A],
SM [auth A],
SN [auth A],
SO [auth A],
SU [auth h1],
TK [auth A],
TL [auth A],
TM [auth A],
TN [auth A],
TO [auth A],
TP [auth Ea],
TQ [auth Ua],
TU [auth h1],
UK [auth A],
UL [auth A],
UM [auth A],
UN [auth A],
UO [auth A],
UP [auth Va],
UU [auth h1],
VK [auth A],
VL [auth A],
VM [auth A],
VN [auth A],
VO [auth A],
VU [auth h1],
WK [auth A],
WL [auth A],
WM [auth A],
WN [auth A],
WO [auth A],
WP [auth BD],
WU [auth h1],
XK [auth A],
XL [auth A],
XM [auth A],
XN [auth A],
XO [auth A],
XU [auth h1],
YK [auth A],
YL [auth A],
YM [auth A],
YN [auth A],
YO [auth A],
YQ [auth Ca],
YU [auth h1],
ZK [auth A],
ZL [auth A],
ZM [auth A],
ZN [auth A],
ZO [auth A],
ZP [auth BS],
ZU [auth h1]
POTASSIUM ION
K
NPYPAHLBTDXSSS-UHFFFAOYSA-N
MG
Query on MG

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AE [auth A]
AF [auth A]
AG [auth A]
AH [auth A]
AI [auth A]
AE [auth A],
AF [auth A],
AG [auth A],
AH [auth A],
AI [auth A],
AJ [auth A],
AK [auth A],
AS [auth h1],
AT [auth h1],
AU [auth h1],
BE [auth A],
BF [auth A],
BG [auth A],
BH [auth A],
BI [auth A],
BJ [auth A],
BK [auth A],
BQ [auth AC],
BS [auth h1],
BT [auth h1],
BU [auth h1],
CE [auth A],
CF [auth A],
CG [auth A],
CH [auth A],
CI [auth A],
CJ [auth A],
CK [auth A],
CQ [auth BI],
CS [auth h1],
CT [auth h1],
CU [auth h1],
DE [auth A],
DF [auth A],
DG [auth A],
DH [auth A],
DI [auth A],
DJ [auth A],
DK [auth A],
DS [auth h1],
DT [auth h1],
DU [auth h1],
EC [auth 3],
EE [auth A],
EF [auth A],
EG [auth A],
EH [auth A],
EI [auth A],
EJ [auth A],
EK [auth A],
ES [auth h1],
ET [auth h1],
FC [auth 3],
FE [auth A],
FF [auth A],
FG [auth A],
FH [auth A],
FI [auth A],
FJ [auth A],
FK [auth A],
FR [auth h1],
FS [auth h1],
FT [auth h1],
GC [auth 3],
GD [auth A],
GE [auth A],
GF [auth A],
GG [auth A],
GH [auth A],
GI [auth A],
GJ [auth A],
GK [auth A],
GR [auth h1],
GS [auth h1],
GT [auth h1],
HC [auth 3],
HD [auth A],
HE [auth A],
HF [auth A],
HG [auth A],
HH [auth A],
HI [auth A],
HJ [auth A],
HK [auth A],
HR [auth h1],
HS [auth h1],
HT [auth h1],
ID [auth A],
IE [auth A],
IF [auth A],
IG [auth A],
IH [auth A],
II [auth A],
IJ [auth A],
IK [auth A],
IR [auth h1],
IS [auth h1],
IT [auth h1],
JD [auth A],
JE [auth A],
JF [auth A],
JG [auth A],
JH [auth A],
JI [auth A],
JJ [auth A],
JK [auth A],
JP [auth C3],
JQ [auth BR],
JR [auth h1],
JS [auth h1],
JT [auth h1],
KD [auth A],
KE [auth A],
KF [auth A],
KG [auth A],
KH [auth A],
KI [auth A],
KJ [auth A],
KK [auth A],
KP [auth C3],
KQ [auth BV],
KR [auth h1],
KS [auth h1],
KT [auth h1],
LD [auth A],
LE [auth A],
LF [auth A],
LG [auth A],
LH [auth A],
LI [auth A],
LJ [auth A],
LK [auth A],
LP [auth C3],
LR [auth h1],
LS [auth h1],
LT [auth h1],
MD [auth A],
ME [auth A],
MF [auth A],
MG [auth A],
MH [auth A],
MI [auth A],
MJ [auth A],
MK [auth A],
MP [auth C3],
MR [auth h1],
MS [auth h1],
MT [auth h1],
ND [auth A],
NE [auth A],
NF [auth A],
NG [auth A],
NH [auth A],
NI [auth A],
NJ [auth A],
NK [auth A],
NR [auth h1],
NS [auth h1],
NT [auth h1],
OD [auth A],
OE [auth A],
OF [auth A],
OG [auth A],
OH [auth A],
OI [auth A],
OJ [auth A],
OK [auth A],
OP [auth BM],
OR [auth h1],
OS [auth h1],
OT [auth h1],
PD [auth A],
PE [auth A],
PF [auth A],
PG [auth A],
PH [auth A],
PI [auth A],
PJ [auth A],
PK [auth A],
PQ [auth Wa],
PR [auth h1],
PS [auth h1],
PT [auth h1],
QD [auth A],
QE [auth A],
QF [auth A],
QG [auth A],
QH [auth A],
QI [auth A],
QJ [auth A],
QK [auth A],
QR [auth h1],
QS [auth h1],
QT [auth h1],
RD [auth A],
RE [auth A],
RF [auth A],
RG [auth A],
RH [auth A],
RI [auth A],
RJ [auth A],
RQ [auth Ta],
RR [auth h1],
RS [auth h1],
RT [auth h1],
SD [auth A],
SE [auth A],
SF [auth A],
SG [auth A],
SH [auth A],
SI [auth A],
SJ [auth A],
SR [auth h1],
SS [auth h1],
ST [auth h1],
TD [auth A],
TE [auth A],
TF [auth A],
TG [auth A],
TH [auth A],
TI [auth A],
TJ [auth A],
TR [auth h1],
TS [auth h1],
TT [auth h1],
UD [auth A],
UE [auth A],
UF [auth A],
UG [auth A],
UH [auth A],
UI [auth A],
UJ [auth A],
UR [auth h1],
US [auth h1],
UT [auth h1],
VD [auth A],
VE [auth A],
VF [auth A],
VG [auth A],
VH [auth A],
VI [auth A],
VJ [auth A],
VQ [auth AY],
VR [auth h1],
VS [auth h1],
VT [auth h1],
WD [auth A],
WE [auth A],
WF [auth A],
WG [auth A],
WH [auth A],
WI [auth A],
WJ [auth A],
WQ [auth AY],
WR [auth h1],
WS [auth h1],
WT [auth h1],
XD [auth A],
XE [auth A],
XF [auth A],
XG [auth A],
XH [auth A],
XI [auth A],
XJ [auth A],
XP [auth BS],
XR [auth h1],
XS [auth h1],
XT [auth h1],
YD [auth A],
YE [auth A],
YF [auth A],
YG [auth A],
YH [auth A],
YI [auth A],
YJ [auth A],
YP [auth BS],
YR [auth h1],
YS [auth h1],
YT [auth h1],
ZD [auth A],
ZE [auth A],
ZF [auth A],
ZG [auth A],
ZH [auth A],
ZI [auth A],
ZJ [auth A],
ZR [auth h1],
ZS [auth h1],
ZT [auth h1]
MAGNESIUM ION
Mg
JLVVSXFLKOJNIY-UHFFFAOYSA-N
Modified Residues  2 Unique
IDChains TypeFormula2D DiagramParent
HIC
Query on HIC
V [auth BS]L-PEPTIDE LINKINGC7 H11 N3 O2HIS
MLY
Query on MLY
CB [auth Ga]L-PEPTIDE LINKINGC8 H18 N2 O2LYS
Experimental Data & Validation

Experimental Data

  • Method: ELECTRON MICROSCOPY
  • Resolution: 2.25 Å
  • Aggregation State: PARTICLE 
  • Reconstruction Method: SINGLE PARTICLE 

Structure Validation

View Full Validation Report



Entry History & Funding Information

Deposition Data


Funding OrganizationLocationGrant Number
Gatsby Charitable FoundationUnited KingdomGAT3395/PR3
Biotechnology and Biological Sciences Research Council (BBSRC)United KingdomBB/N013158/1
European Research Council (ERC)European Union323052

Revision History  (Full details and data files)

  • Version 1.0: 2026-02-04
    Type: Initial release
  • Version 1.1: 2026-02-25
    Changes: Data collection, Database references