Download MendeleyStructure of the Arabidopsis thaliana 80S ribosome in complex with P- and E-site tRNAs and mRNA
Faille, A., Warren, A.J., Hellmann, E., Ko, D., Ruonala, R., Helariutta, Y.E.(2026) Science
9HMW | pdb_00009hmw
Structure of the Arabidopsis thaliana 80S ribosome OVAC mutant in complex with P- and E-site tRNAs and mRNA
- PDB DOI: https://doi.org/10.2210/pdb9HMW/pdb
- EM Map EMD-52299: EMDB EMDataResource
- Classification: RIBOSOME
- Organism(s): Arabidopsis thaliana
- Mutation(s): No
- Deposited: 2024-12-09 Released: 2026-02-04
- Funding Organization(s): Gatsby Charitable Foundation, Biotechnology and Biological Sciences Research Council (BBSRC), European Research Council (ERC)
Experimental Data Snapshot
- Method: ELECTRON MICROSCOPY
- Resolution: 2.25 Å
- Aggregation State: PARTICLE
- Reconstruction Method: SINGLE PARTICLE
wwPDB Validation 3D Report Full Report
This is version 1.0 of the entry. See complete history.
Literature
Macromolecules
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Entity ID: 5 | |||||
|---|---|---|---|---|---|
| Molecule | Chains | Sequence Length | Organism | Details | Image |
| Small ribosomal subunit protein eS32 eS32z/eS32y/eS32x/eS32w/eS32v | E [auth BC] | 25 | Arabidopsis thaliana | Mutation(s): 0 |  |
UniProt | |||||
Find proteins for P62120 (Arabidopsis thaliana) Explore P62120 Go to UniProtKB: P62120 | |||||
Entity Groups | |||||
| Sequence Clusters | 30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity | ||||
| UniProt Group | P62120 | ||||
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Entity ID: 6 | |||||
|---|---|---|---|---|---|
| Molecule | Chains | Sequence Length | Organism | Details | Image |
| Large ribosomal subunit protein uL22z | F [auth BM] | 176 | Arabidopsis thaliana | Mutation(s): 0 |  |
UniProt | |||||
Find proteins for Q93VI3 (Arabidopsis thaliana) Explore Q93VI3 Go to UniProtKB: Q93VI3 | |||||
Entity Groups | |||||
| Sequence Clusters | 30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity | ||||
| UniProt Group | Q93VI3 | ||||
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Entity ID: 7 | |||||
|---|---|---|---|---|---|
| Molecule | Chains | Sequence Length | Organism | Details | Image |
| Large ribosomal subunit protein uL24z | G [auth BO] | 146 | Arabidopsis thaliana | Mutation(s): 0 |  |
UniProt | |||||
Find proteins for P51414 (Arabidopsis thaliana) Explore P51414 Go to UniProtKB: P51414 | |||||
Entity Groups | |||||
| Sequence Clusters | 30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity | ||||
| UniProt Group | P51414 | ||||
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Entity ID: 8 | |||||
|---|---|---|---|---|---|
| Molecule | Chains | Sequence Length | Organism | Details | Image |
| 60S ribosomal protein L29 | H [auth AR] | 83 | Arabidopsis thaliana | Mutation(s): 0 |  |
UniProt | |||||
Find proteins for F4JC32 (Arabidopsis thaliana) Explore F4JC32 Go to UniProtKB: F4JC32 | |||||
Entity Groups | |||||
| Sequence Clusters | 30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity | ||||
| UniProt Group | F4JC32 | ||||
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Entity ID: 9 | |||||
|---|---|---|---|---|---|
| Molecule | Chains | Sequence Length | Organism | Details | Image |
| Large ribosomal subunit protein eL31y | I [auth AU] | 119 | Arabidopsis thaliana | Mutation(s): 0 |  |
UniProt | |||||
Find proteins for Q9STR1 (Arabidopsis thaliana) Explore Q9STR1 Go to UniProtKB: Q9STR1 | |||||
Entity Groups | |||||
| Sequence Clusters | 30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity | ||||
| UniProt Group | Q9STR1 | ||||
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Entity ID: 10 | |||||
|---|---|---|---|---|---|
| Molecule | Chains | Sequence Length | Organism | Details | Image |
| Small ribosomal subunit protein eS26y | J [auth Ma] | 131 | Arabidopsis thaliana | Mutation(s): 0 |  |
UniProt | |||||
Find proteins for P49206 (Arabidopsis thaliana) Explore P49206 Go to UniProtKB: P49206 | |||||
Entity Groups | |||||
| Sequence Clusters | 30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity | ||||
| UniProt Group | P49206 | ||||
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Entity ID: 11 | |||||
|---|---|---|---|---|---|
| Molecule | Chains | Sequence Length | Organism | Details | Image |
| Large ribosomal subunit protein uL6z/uL6y | K [auth Ia] | 194 | Arabidopsis thaliana | Mutation(s): 0 |  |
UniProt | |||||
Find proteins for P49209 (Arabidopsis thaliana) Explore P49209 Go to UniProtKB: P49209 | |||||
Entity Groups | |||||
| Sequence Clusters | 30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity | ||||
| UniProt Group | P49209 | ||||
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Entity ID: 12 | |||||
|---|---|---|---|---|---|
| Molecule | Chains | Sequence Length | Organism | Details | Image |
| Small ribosomal subunit protein uS8z/uS8w | L [auth AE] | 130 | Arabidopsis thaliana | Mutation(s): 0 |  |
UniProt | |||||
Find proteins for P42798 (Arabidopsis thaliana) Explore P42798 Go to UniProtKB: P42798 | |||||
Entity Groups | |||||
| Sequence Clusters | 30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity | ||||
| UniProt Group | P42798 | ||||
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Entity ID: 13 | |||||
|---|---|---|---|---|---|
| Molecule | Chains | Sequence Length | Organism | Details | Image |
| Large ribosomal subunit protein eL36y | M [auth AX] | 112 | Arabidopsis thaliana | Mutation(s): 0 |  |
UniProt | |||||
Find proteins for Q9M352 (Arabidopsis thaliana) Explore Q9M352 Go to UniProtKB: Q9M352 | |||||
Entity Groups | |||||
| Sequence Clusters | 30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity | ||||
| UniProt Group | Q9M352 | ||||
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Entity ID: 14 | |||||
|---|---|---|---|---|---|
| Molecule | Chains | Sequence Length | Organism | Details | Image |
| Large ribosomal subunit protein eL27x | N [auth AP] | 135 | Arabidopsis thaliana | Mutation(s): 0 |  |
UniProt | |||||
Find proteins for P51419 (Arabidopsis thaliana) Explore P51419 Go to UniProtKB: P51419 | |||||
Entity Groups | |||||
| Sequence Clusters | 30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity | ||||
| UniProt Group | P51419 | ||||
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Entity ID: 15 | |||||
|---|---|---|---|---|---|
| Molecule | Chains | Sequence Length | Organism | Details | Image |
| Small ribosomal subunit protein eS4x | O [auth Ja] | 262 | Arabidopsis thaliana | Mutation(s): 0 |  |
UniProt | |||||
Find proteins for Q8VYK6 (Arabidopsis thaliana) Explore Q8VYK6 Go to UniProtKB: Q8VYK6 | |||||
Entity Groups | |||||
| Sequence Clusters | 30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity | ||||
| UniProt Group | Q8VYK6 | ||||
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Entity ID: 16 | |||||
|---|---|---|---|---|---|
| Molecule | Chains | Sequence Length | Organism | Details | Image |
| Large ribosomal subunit protein eL15z | P [auth Ea] | 204 | Arabidopsis thaliana | Mutation(s): 0 |  |
UniProt | |||||
Find proteins for O23515 (Arabidopsis thaliana) Explore O23515 Go to UniProtKB: O23515 | |||||
Entity Groups | |||||
| Sequence Clusters | 30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity | ||||
| UniProt Group | O23515 | ||||
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Entity ID: 17 | |||||
|---|---|---|---|---|---|
| Molecule | Chains | Sequence Length | Organism | Details | Image |
| Ribosomal protein L18ae/LX family protein | Q [auth AL] | 217 | Arabidopsis thaliana | Mutation(s): 0 |  |
UniProt | |||||
Find proteins for A0A1P8AY36 (Arabidopsis thaliana) Explore A0A1P8AY36 Go to UniProtKB: A0A1P8AY36 | |||||
Entity Groups | |||||
| Sequence Clusters | 30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity | ||||
| UniProt Group | A0A1P8AY36 | ||||
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Entity ID: 18 | |||||
|---|---|---|---|---|---|
| Molecule | Chains | Sequence Length | Organism | Details | Image |
| Small ribosomal subunit protein uS12y | R [auth Va] | 142 | Arabidopsis thaliana | Mutation(s): 0 |  |
UniProt | |||||
Find proteins for P49201 (Arabidopsis thaliana) Explore P49201 Go to UniProtKB: P49201 | |||||
Entity Groups | |||||
| Sequence Clusters | 30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity | ||||
| UniProt Group | P49201 | ||||
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| |||||
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Entity ID: 19 | |||||
|---|---|---|---|---|---|
| Molecule | Chains | Sequence Length | Organism | Details | Image |
| Small ribosomal subunit protein eS24y | S [auth Ka] | 133 | Arabidopsis thaliana | Mutation(s): 0 |  |
UniProt | |||||
Find proteins for Q8LC83 (Arabidopsis thaliana) Explore Q8LC83 Go to UniProtKB: Q8LC83 | |||||
Entity Groups | |||||
| Sequence Clusters | 30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity | ||||
| UniProt Group | Q8LC83 | ||||
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Entity ID: 20 | |||||
|---|---|---|---|---|---|
| Molecule | Chains | Sequence Length | Organism | Details | Image |
| Large ribosomal subunit protein eL33y | T [auth AW] | 112 | Arabidopsis thaliana | Mutation(s): 0 |  |
UniProt | |||||
Find proteins for Q9C912 (Arabidopsis thaliana) Explore Q9C912 Go to UniProtKB: Q9C912 | |||||
Entity Groups | |||||
| Sequence Clusters | 30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity | ||||
| UniProt Group | Q9C912 | ||||
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Entity ID: 21 | |||||
|---|---|---|---|---|---|
| Molecule | Chains | Sequence Length | Organism | Details | Image |
| Large ribosomal subunit protein eL42z/eL42y | U [auth BD] | 105 | Arabidopsis thaliana | Mutation(s): 0 |  |
UniProt | |||||
Find proteins for O23290 (Arabidopsis thaliana) Explore O23290 Go to UniProtKB: O23290 | |||||
Entity Groups | |||||
| Sequence Clusters | 30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity | ||||
| UniProt Group | O23290 | ||||
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Entity ID: 22 | |||||
|---|---|---|---|---|---|
| Molecule | Chains | Sequence Length | Organism | Details | Image |
| Large ribosomal subunit protein uL3z | V [auth BS] | 389 | Arabidopsis thaliana | Mutation(s): 0 |  |
UniProt | |||||
Find proteins for P17094 (Arabidopsis thaliana) Explore P17094 Go to UniProtKB: P17094 | |||||
Entity Groups | |||||
| Sequence Clusters | 30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity | ||||
| UniProt Group | P17094 | ||||
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Entity ID: 23 | |||||
|---|---|---|---|---|---|
| Molecule | Chains | Sequence Length | Organism | Details | Image |
| Large ribosomal subunit protein eL21z/eL21y | W [auth AM] | 164 | Arabidopsis thaliana | Mutation(s): 0 |  |
UniProt | |||||
Find proteins for Q43291 (Arabidopsis thaliana) Explore Q43291 Go to UniProtKB: Q43291 | |||||
Entity Groups | |||||
| Sequence Clusters | 30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity | ||||
| UniProt Group | Q43291 | ||||
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Entity ID: 24 | |||||
|---|---|---|---|---|---|
| Molecule | Chains | Sequence Length | Organism | Details | Image |
| Small ribosomal subunit protein uS5y/uS5u/uS5v | X [auth AC] | 284 | Arabidopsis thaliana | Mutation(s): 0 |  |
UniProt | |||||
Find proteins for Q93VB8 (Arabidopsis thaliana) Explore Q93VB8 Go to UniProtKB: Q93VB8 | |||||
Entity Groups | |||||
| Sequence Clusters | 30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity | ||||
| UniProt Group | Q93VB8 | ||||
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Entity ID: 25 | |||||
|---|---|---|---|---|---|
| Molecule | Chains | Sequence Length | Organism | Details | Image |
| Large ribosomal subunit protein uL14x/uL14z/uL14y | Y [auth BI] | 140 | Arabidopsis thaliana | Mutation(s): 0 |  |
UniProt | |||||
Find proteins for P49690 (Arabidopsis thaliana) Explore P49690 Go to UniProtKB: P49690 | |||||
Entity Groups | |||||
| Sequence Clusters | 30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity | ||||
| UniProt Group | P49690 | ||||
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Entity ID: 26 | |||||
|---|---|---|---|---|---|
| Molecule | Chains | Sequence Length | Organism | Details | Image |
| Large ribosomal subunit protein eL14y | Z [auth AH] | 134 | Arabidopsis thaliana | Mutation(s): 0 |  |
UniProt | |||||
Find proteins for Q9T043 (Arabidopsis thaliana) Explore Q9T043 Go to UniProtKB: Q9T043 | |||||
Entity Groups | |||||
| Sequence Clusters | 30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity | ||||
| UniProt Group | Q9T043 | ||||
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Entity ID: 27 | |||||
|---|---|---|---|---|---|
| Molecule | Chains | Sequence Length | Organism | Details | Image |
| Large ribosomal subunit protein uL4z | AA [auth BT] | 406 | Arabidopsis thaliana | Mutation(s): 0 |  |
UniProt | |||||
Find proteins for Q9SF40 (Arabidopsis thaliana) Explore Q9SF40 Go to UniProtKB: Q9SF40 | |||||
Entity Groups | |||||
| Sequence Clusters | 30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity | ||||
| UniProt Group | Q9SF40 | ||||
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Entity ID: 28 | |||||
|---|---|---|---|---|---|
| Molecule | Chains | Sequence Length | Organism | Details | Image |
| Large ribosomal subunit protein eL32z | BA [auth AV] | 133 | Arabidopsis thaliana | Mutation(s): 0 |  |
UniProt | |||||
Find proteins for P49211 (Arabidopsis thaliana) Explore P49211 Go to UniProtKB: P49211 | |||||
Entity Groups | |||||
| Sequence Clusters | 30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity | ||||
| UniProt Group | P49211 | ||||
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Entity ID: 29 | |||||
|---|---|---|---|---|---|
| Molecule | Chains | Sequence Length | Organism | Details | Image |
| Small ribosomal subunit protein uS7y | CA [auth AD] | 207 | Arabidopsis thaliana | Mutation(s): 0 |  |
UniProt | |||||
Find proteins for P51427 (Arabidopsis thaliana) Explore P51427 Go to UniProtKB: P51427 | |||||
Entity Groups | |||||
| Sequence Clusters | 30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity | ||||
| UniProt Group | P51427 | ||||
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Entity ID: 30 | |||||
|---|---|---|---|---|---|
| Molecule | Chains | Sequence Length | Organism | Details | Image |
| Large ribosomal subunit protein eL18x | DA [auth AJ] | 187 | Arabidopsis thaliana | Mutation(s): 0 |  |
UniProt | |||||
Find proteins for Q940B0 (Arabidopsis thaliana) Explore Q940B0 Go to UniProtKB: Q940B0 | |||||
Entity Groups | |||||
| Sequence Clusters | 30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity | ||||
| UniProt Group | Q940B0 | ||||
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Entity ID: 31 | |||||
|---|---|---|---|---|---|
| Molecule | Chains | Sequence Length | Organism | Details | Image |
| Large ribosomal subunit protein uL2z | EA [auth BQ] | 258 | Arabidopsis thaliana | Mutation(s): 0 |  |
UniProt | |||||
Find proteins for P46286 (Arabidopsis thaliana) Explore P46286 Go to UniProtKB: P46286 | |||||
Entity Groups | |||||
| Sequence Clusters | 30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity | ||||
| UniProt Group | P46286 | ||||
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Entity ID: 32 | |||||
|---|---|---|---|---|---|
| Molecule | Chains | Sequence Length | Organism | Details | Image |
| Large ribosomal subunit protein uL13y | FA [auth BH] | 206 | Arabidopsis thaliana | Mutation(s): 0 |  |
UniProt | |||||
Find proteins for Q9LRX8 (Arabidopsis thaliana) Explore Q9LRX8 Go to UniProtKB: Q9LRX8 | |||||
Entity Groups | |||||
| Sequence Clusters | 30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity | ||||
| UniProt Group | Q9LRX8 | ||||
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Entity ID: 33 | |||||
|---|---|---|---|---|---|
| Molecule | Chains | Sequence Length | Organism | Details | Image |
| Small ribosomal subunit protein uS15y | GA [auth Da] | 151 | Arabidopsis thaliana | Mutation(s): 0 |  |
UniProt | |||||
Find proteins for P59224 (Arabidopsis thaliana) Explore P59224 Go to UniProtKB: P59224 | |||||
Entity Groups | |||||
| Sequence Clusters | 30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity | ||||
| UniProt Group | P59224 | ||||
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Entity ID: 34 | |||||
|---|---|---|---|---|---|
| Molecule | Chains | Sequence Length | Organism | Details | Image |
| Large ribosomal subunit protein uL18z | HA [auth BK] | 301 | Arabidopsis thaliana | Mutation(s): 0 |  |
UniProt | |||||
Find proteins for Q8LBI1 (Arabidopsis thaliana) Explore Q8LBI1 Go to UniProtKB: Q8LBI1 | |||||
Entity Groups | |||||
| Sequence Clusters | 30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity | ||||
| UniProt Group | Q8LBI1 | ||||
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Entity ID: 35 | |||||
|---|---|---|---|---|---|
| Molecule | Chains | Sequence Length | Organism | Details | Image |
| Large ribosomal subunit protein eL30y | IA [auth AT] | 112 | Arabidopsis thaliana | Mutation(s): 0 |  |
UniProt | |||||
Find proteins for Q8VZ19 (Arabidopsis thaliana) Explore Q8VZ19 Go to UniProtKB: Q8VZ19 | |||||
Entity Groups | |||||
| Sequence Clusters | 30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity | ||||
| UniProt Group | Q8VZ19 | ||||
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Entity ID: 36 | |||||
|---|---|---|---|---|---|
| Molecule | Chains | Sequence Length | Organism | Details | Image |
| Small ribosomal subunit protein eS30z/eS30y/eS30x | JA [auth Pa] | 62 | Arabidopsis thaliana | Mutation(s): 0 |  |
UniProt | |||||
Find proteins for P49689 (Arabidopsis thaliana) Explore P49689 Go to UniProtKB: P49689 | |||||
Entity Groups | |||||
| Sequence Clusters | 30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity | ||||
| UniProt Group | P49689 | ||||
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Entity ID: 37 | |||||
|---|---|---|---|---|---|
| Molecule | Chains | Sequence Length | Organism | Details | Image |
| Large ribosomal subunit protein uL29x | KA [auth BP] | 123 | Arabidopsis thaliana | Mutation(s): 0 |  |
UniProt | |||||
Find proteins for Q9M3D2 (Arabidopsis thaliana) Explore Q9M3D2 Go to UniProtKB: Q9M3D2 | |||||
Entity Groups | |||||
| Sequence Clusters | 30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity | ||||
| UniProt Group | Q9M3D2 | ||||
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Entity ID: 38 | |||||
|---|---|---|---|---|---|
| Molecule | Chains | Sequence Length | Organism | Details | Image |
| Large ribosomal subunit protein uL23y | LA [auth BN] | 154 | Arabidopsis thaliana | Mutation(s): 0 |  |
UniProt | |||||
Find proteins for Q9M3C3 (Arabidopsis thaliana) Explore Q9M3C3 Go to UniProtKB: Q9M3C3 | |||||
Entity Groups | |||||
| Sequence Clusters | 30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity | ||||
| UniProt Group | Q9M3C3 | ||||
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Entity ID: 39 | |||||
|---|---|---|---|---|---|
| Molecule | Chains | Sequence Length | Organism | Details | Image |
| Large ribosomal subunit protein eL8y | MA [auth BG] | 256 | Arabidopsis thaliana | Mutation(s): 0 |  |
UniProt | |||||
Find proteins for Q9LZH9 (Arabidopsis thaliana) Explore Q9LZH9 Go to UniProtKB: Q9LZH9 | |||||
Entity Groups | |||||
| Sequence Clusters | 30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity | ||||
| UniProt Group | Q9LZH9 | ||||
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Entity ID: 40 | |||||
|---|---|---|---|---|---|
| Molecule | Chains | Sequence Length | Organism | Details | Image |
| Large ribosomal subunit protein eL34z | NA [auth Fa] | 120 | Arabidopsis thaliana | Mutation(s): 0 |  |
UniProt | |||||
Find proteins for Q42351 (Arabidopsis thaliana) Explore Q42351 Go to UniProtKB: Q42351 | |||||
Entity Groups | |||||
| Sequence Clusters | 30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity | ||||
| UniProt Group | Q42351 | ||||
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Entity ID: 41 | |||||
|---|---|---|---|---|---|
| Molecule | Chains | Sequence Length | Organism | Details | Image |
| Large ribosomal subunit protein uL15x | OA [auth Ha] | 146 | Arabidopsis thaliana | Mutation(s): 0 |  |
UniProt | |||||
Find proteins for P49637 (Arabidopsis thaliana) Explore P49637 Go to UniProtKB: P49637 | |||||
Entity Groups | |||||
| Sequence Clusters | 30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity | ||||
| UniProt Group | P49637 | ||||
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Entity ID: 42 | |||||
|---|---|---|---|---|---|
| Molecule | Chains | Sequence Length | Organism | Details | Image |
| Large ribosomal subunit protein uL5z | PA [auth BU] | 182 | Arabidopsis thaliana | Mutation(s): 0 |  |
UniProt | |||||
Find proteins for P42795 (Arabidopsis thaliana) Explore P42795 Go to UniProtKB: P42795 | |||||
Entity Groups | |||||
| Sequence Clusters | 30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity | ||||
| UniProt Group | P42795 | ||||
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Entity ID: 43 | |||||
|---|---|---|---|---|---|
| Molecule | Chains | Sequence Length | Organism | Details | Image |
| Ribosomal protein L30/L7 family protein | QA [auth BR] | 247 | Arabidopsis thaliana | Mutation(s): 0 |  |
UniProt | |||||
Find proteins for F4IT48 (Arabidopsis thaliana) Explore F4IT48 Go to UniProtKB: F4IT48 | |||||
Entity Groups | |||||
| Sequence Clusters | 30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity | ||||
| UniProt Group | F4IT48 | ||||
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Entity ID: 44 | |||||
|---|---|---|---|---|---|
| Molecule | Chains | Sequence Length | Organism | Details | Image |
| Small ribosomal subunit protein uS17z | RA [auth Xa] | 160 | Arabidopsis thaliana | Mutation(s): 0 |  |
UniProt | |||||
Find proteins for P16181 (Arabidopsis thaliana) Explore P16181 Go to UniProtKB: P16181 | |||||
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| UniProt Group | P16181 | ||||
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Entity ID: 45 | |||||
|---|---|---|---|---|---|
| Molecule | Chains | Sequence Length | Organism | Details | Image |
| Small ribosomal subunit protein eS1y | SA [auth BV] | 262 | Arabidopsis thaliana | Mutation(s): 0 |  |
UniProt | |||||
Find proteins for Q42262 (Arabidopsis thaliana) Explore Q42262 Go to UniProtKB: Q42262 | |||||
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| UniProt Group | Q42262 | ||||
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Entity ID: 46 | |||||
|---|---|---|---|---|---|
| Molecule | Chains | Sequence Length | Organism | Details | Image |
| Large ribosomal subunit protein uL16y | TA [auth BJ] | 221 | Arabidopsis thaliana | Mutation(s): 0 |  |
UniProt | |||||
Find proteins for Q08770 (Arabidopsis thaliana) Explore Q08770 Go to UniProtKB: Q08770 | |||||
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| UniProt Group | Q08770 | ||||
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Entity ID: 47 | |||||
|---|---|---|---|---|---|
| Molecule | Chains | Sequence Length | Organism | Details | Image |
| Large ribosomal subunit protein eL24z | UA [auth AO] | 164 | Arabidopsis thaliana | Mutation(s): 0 |  |
UniProt | |||||
Find proteins for Q42347 (Arabidopsis thaliana) Explore Q42347 Go to UniProtKB: Q42347 | |||||
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| UniProt Group | Q42347 | ||||
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Entity ID: 48 | |||||
|---|---|---|---|---|---|
| Molecule | Chains | Sequence Length | Organism | Details | Image |
| Small ribosomal subunit protein eS21y | VA [auth BW] | 82 | Arabidopsis thaliana | Mutation(s): 0 |  |
UniProt | |||||
Find proteins for Q3E902 (Arabidopsis thaliana) Explore Q3E902 Go to UniProtKB: Q3E902 | |||||
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| UniProt Group | Q3E902 | ||||
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Entity ID: 49 | |||||
|---|---|---|---|---|---|
| Molecule | Chains | Sequence Length | Organism | Details | Image |
| Large ribosomal subunit protein eL19x | WA [auth AK] | 214 | Arabidopsis thaliana | Mutation(s): 0 |  |
UniProt | |||||
Find proteins for Q9SRX2 (Arabidopsis thaliana) Explore Q9SRX2 Go to UniProtKB: Q9SRX2 | |||||
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| UniProt Group | Q9SRX2 | ||||
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Entity ID: 50 | |||||
|---|---|---|---|---|---|
| Molecule | Chains | Sequence Length | Organism | Details | Image |
| Small ribosomal subunit protein eS27y | XA [auth Na] | 86 | Arabidopsis thaliana | Mutation(s): 0 |  |
UniProt | |||||
Find proteins for Q9M2F1 (Arabidopsis thaliana) Explore Q9M2F1 Go to UniProtKB: Q9M2F1 | |||||
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| UniProt Group | Q9M2F1 | ||||
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Entity ID: 51 | |||||
|---|---|---|---|---|---|
| Molecule | Chains | Sequence Length | Organism | Details | Image |
| Small ribosomal subunit protein uS4y | YA [auth AB] | 197 | Arabidopsis thaliana | Mutation(s): 0 |  |
UniProt | |||||
Find proteins for Q9FLF0 (Arabidopsis thaliana) Explore Q9FLF0 Go to UniProtKB: Q9FLF0 | |||||
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| UniProt Group | Q9FLF0 | ||||
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Entity ID: 52 | |||||
|---|---|---|---|---|---|
| Molecule | Chains | Sequence Length | Organism | Details | Image |
| Large ribosomal subunit protein eL6y | ZA [auth BF] | 233 | Arabidopsis thaliana | Mutation(s): 0 |  |
UniProt | |||||
Find proteins for Q9C9C6 (Arabidopsis thaliana) Explore Q9C9C6 Go to UniProtKB: Q9C9C6 | |||||
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| UniProt Group | Q9C9C6 | ||||
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Entity ID: 53 | |||||
|---|---|---|---|---|---|
| Molecule | Chains | Sequence Length | Organism | Details | Image |
| Small ribosomal subunit protein uS3z | AB [auth AA] | 250 | Arabidopsis thaliana | Mutation(s): 0 |  |
UniProt | |||||
Find proteins for Q9SIP7 (Arabidopsis thaliana) Explore Q9SIP7 Go to UniProtKB: Q9SIP7 | |||||
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| UniProt Group | Q9SIP7 | ||||
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Entity ID: 54 | |||||
|---|---|---|---|---|---|
| Molecule | Chains | Sequence Length | Organism | Details | Image |
| Large ribosomal subunit protein eL13z | BB [auth AG] | 206 | Arabidopsis thaliana | Mutation(s): 0 |  |
UniProt | |||||
Find proteins for P41127 (Arabidopsis thaliana) Explore P41127 Go to UniProtKB: P41127 | |||||
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| UniProt Group | P41127 | ||||
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Entity ID: 55 | |||||
|---|---|---|---|---|---|
| Molecule | Chains | Sequence Length | Organism | Details | Image |
| Ubiquitin-ribosomal protein eL40z fusion protein | CB [auth Ga] | 128 | Arabidopsis thaliana | Mutation(s): 0 |  |
UniProt | |||||
Find proteins for B9DHA6 (Arabidopsis thaliana) Explore B9DHA6 Go to UniProtKB: B9DHA6 | |||||
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| UniProt Group | B9DHA6 | ||||
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Entity ID: 56 | |||||
|---|---|---|---|---|---|
| Molecule | Chains | Sequence Length | Organism | Details | Image |
| Large ribosomal subunit protein eL39z/eL39x | DB [auth BA] | 51 | Arabidopsis thaliana | Mutation(s): 0 |  |
UniProt | |||||
Find proteins for P51424 (Arabidopsis thaliana) Explore P51424 Go to UniProtKB: P51424 | |||||
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| UniProt Group | P51424 | ||||
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Entity ID: 57 | |||||
|---|---|---|---|---|---|
| Molecule | Chains | Sequence Length | Organism | Details | Image |
| Small ribosomal subunit protein uS9z | EB [auth AF] | 146 | Arabidopsis thaliana | Mutation(s): 0 |  |
UniProt | |||||
Find proteins for Q9SK22 (Arabidopsis thaliana) Explore Q9SK22 Go to UniProtKB: Q9SK22 | |||||
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| UniProt Group | Q9SK22 | ||||
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Entity ID: 58 | |||||
|---|---|---|---|---|---|
| Molecule | Chains | Sequence Length | Organism | Details | Image |
| Small ribosomal subunit protein uS13z/uS13y/uS13x | FB [auth Wa] | 152 | Arabidopsis thaliana | Mutation(s): 0 |  |
UniProt | |||||
Find proteins for P34788 (Arabidopsis thaliana) Explore P34788 Go to UniProtKB: P34788 | |||||
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| UniProt Group | P34788 | ||||
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Entity ID: 59 | |||||
|---|---|---|---|---|---|
| Molecule | Chains | Sequence Length | Organism | Details | Image |
| Small ribosomal subunit protein eS6y | GB [auth Ta] | 249 | Arabidopsis thaliana | Mutation(s): 0 |  |
UniProt | |||||
Find proteins for P51430 (Arabidopsis thaliana) Explore P51430 Go to UniProtKB: P51430 | |||||
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| UniProt Group | P51430 | ||||
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Entity ID: 60 | |||||
|---|---|---|---|---|---|
| Molecule | Chains | Sequence Length | Organism | Details | Image |
| Large ribosomal subunit protein eL38z/eL38y | HB [auth AZ] | 69 | Arabidopsis thaliana | Mutation(s): 0 |  |
UniProt | |||||
Find proteins for O22860 (Arabidopsis thaliana) Explore O22860 Go to UniProtKB: O22860 | |||||
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| UniProt Group | O22860 | ||||
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Entity ID: 61 | |||||
|---|---|---|---|---|---|
| Molecule | Chains | Sequence Length | Organism | Details | Image |
| Large ribosomal subunit protein eL43y | IB [auth BE] | 92 | Arabidopsis thaliana | Mutation(s): 0 |  |
UniProt | |||||
Find proteins for Q8RXU5 (Arabidopsis thaliana) Explore Q8RXU5 Go to UniProtKB: Q8RXU5 | |||||
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| UniProt Group | Q8RXU5 | ||||
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Entity ID: 62 | |||||
|---|---|---|---|---|---|
| Molecule | Chains | Sequence Length | Organism | Details | Image |
| Small ribosomal subunit protein uS2z | JB [auth Za] | 298 | Arabidopsis thaliana | Mutation(s): 0 |  |
UniProt | |||||
Find proteins for Q08682 (Arabidopsis thaliana) Explore Q08682 Go to UniProtKB: Q08682 | |||||
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| UniProt Group | Q08682 | ||||
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Entity ID: 63 | |||||
|---|---|---|---|---|---|
| Molecule | Chains | Sequence Length | Organism | Details | Image |
| Large ribosomal subunit protein eL28z | KB [auth AQ] | 143 | Arabidopsis thaliana | Mutation(s): 0 |  |
UniProt | |||||
Find proteins for O82204 (Arabidopsis thaliana) Explore O82204 Go to UniProtKB: O82204 | |||||
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| UniProt Group | O82204 | ||||
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Entity ID: 64 | |||||
|---|---|---|---|---|---|
| Molecule | Chains | Sequence Length | Organism | Details | Image |
| Small ribosomal subunit protein eS28x | LB [auth Oa] | 64 | Arabidopsis thaliana | Mutation(s): 0 |  |
UniProt | |||||
Find proteins for P34789 (Arabidopsis thaliana) Explore P34789 Go to UniProtKB: P34789 | |||||
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| UniProt Group | P34789 | ||||
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Entity ID: 65 | |||||
|---|---|---|---|---|---|
| Molecule | Chains | Sequence Length | Organism | Details | Image |
| Small ribosomal subunit protein uS11y | MB [auth Ua] | 150 | Arabidopsis thaliana | Mutation(s): 0 |  |
UniProt | |||||
Find proteins for Q9CAX6 (Arabidopsis thaliana) Explore Q9CAX6 Go to UniProtKB: Q9CAX6 | |||||
Entity Groups | |||||
| Sequence Clusters | 30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity | ||||
| UniProt Group | Q9CAX6 | ||||
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Entity ID: 66 | |||||
|---|---|---|---|---|---|
| Molecule | Chains | Sequence Length | Organism | Details | Image |
| Small ribosomal subunit protein uS19y | NB [auth Ya] | 150 | Arabidopsis thaliana | Mutation(s): 0 |  |
UniProt | |||||
Find proteins for Q9FY65 (Arabidopsis thaliana) Explore Q9FY65 Go to UniProtKB: Q9FY65 | |||||
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| UniProt Group | Q9FY65 | ||||
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Entity ID: 67 | |||||
|---|---|---|---|---|---|
| Molecule | Chains | Sequence Length | Organism | Details | Image |
| Small ribosomal subunit protein eS17w | OB [auth BB] | 141 | Arabidopsis thaliana | Mutation(s): 0 |  |
UniProt | |||||
Find proteins for Q9LZ17 (Arabidopsis thaliana) Explore Q9LZ17 Go to UniProtKB: Q9LZ17 | |||||
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| UniProt Group | Q9LZ17 | ||||
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Entity ID: 68 | |||||
|---|---|---|---|---|---|
| Molecule | Chains | Sequence Length | Organism | Details | Image |
| Large ribosomal subunit protein eL22z | PB [auth AN] | 124 | Arabidopsis thaliana | Mutation(s): 0 |  |
UniProt | |||||
Find proteins for Q9M9W1 (Arabidopsis thaliana) Explore Q9M9W1 Go to UniProtKB: Q9M9W1 | |||||
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| UniProt Group | Q9M9W1 | ||||
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Entity ID: 69 | |||||
|---|---|---|---|---|---|
| Molecule | Chains | Sequence Length | Organism | Details | Image |
| Small ribosomal subunit protein eS7x | QB [auth Ra] | 190 | Arabidopsis thaliana | Mutation(s): 0 |  |
UniProt | |||||
Find proteins for Q8LD03 (Arabidopsis thaliana) Explore Q8LD03 Go to UniProtKB: Q8LD03 | |||||
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| UniProt Group | Q8LD03 | ||||
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Entity ID: 70 | |||||
|---|---|---|---|---|---|
| Molecule | Chains | Sequence Length | Organism | Details | Image |
| Small ribosomal subunit protein eS19x | RB [auth BL] | 143 | Arabidopsis thaliana | Mutation(s): 0 |  |
UniProt | |||||
Find proteins for Q9FNP8 (Arabidopsis thaliana) Explore Q9FNP8 Go to UniProtKB: Q9FNP8 | |||||
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| UniProt Group | Q9FNP8 | ||||
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Entity ID: 71 | |||||
|---|---|---|---|---|---|
| Molecule | Chains | Sequence Length | Organism | Details | Image |
| Small ribosomal subunit protein eS25w | SB [auth La] | 108 | Arabidopsis thaliana | Mutation(s): 0 |  |
UniProt | |||||
Find proteins for Q9T029 (Arabidopsis thaliana) Explore Q9T029 Go to UniProtKB: Q9T029 | |||||
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| UniProt Group | Q9T029 | ||||
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Entity ID: 72 | |||||
|---|---|---|---|---|---|
| Molecule | Chains | Sequence Length | Organism | Details | Image |
| Small ribosomal subunit protein eS8z | TB [auth Aa] | 222 | Arabidopsis thaliana | Mutation(s): 0 |  |
UniProt | |||||
Find proteins for Q93VG5 (Arabidopsis thaliana) Explore Q93VG5 Go to UniProtKB: Q93VG5 | |||||
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| UniProt Group | Q93VG5 | ||||
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Entity ID: 73 | |||||
|---|---|---|---|---|---|
| Molecule | Chains | Sequence Length | Organism | Details | Image |
| Large ribosomal subunit protein eL37z | UB [auth AY] | 95 | Arabidopsis thaliana | Mutation(s): 0 |  |
UniProt | |||||
Find proteins for Q8LFH7 (Arabidopsis thaliana) Explore Q8LFH7 Go to UniProtKB: Q8LFH7 | |||||
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| UniProt Group | Q8LFH7 | ||||
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Entity ID: 74 | |||||
|---|---|---|---|---|---|
| Molecule | Chains | Sequence Length | Organism | Details | Image |
| Small ribosomal subunit protein uS14z/uS14y/uS14x | VB [auth Ca] | 56 | Arabidopsis thaliana | Mutation(s): 0 |  |
UniProt | |||||
Find proteins for Q680P8 (Arabidopsis thaliana) Explore Q680P8 Go to UniProtKB: Q680P8 | |||||
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| UniProt Group | Q680P8 | ||||
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Entity ID: 77 | |||||
|---|---|---|---|---|---|
| Molecule | Chains | Sequence Length | Organism | Details | Image |
| Small ribosomal subunit protein uS10y | ZB [auth Ba] | 122 | Arabidopsis thaliana | Mutation(s): 0 |  |
UniProt | |||||
Find proteins for Q9STY6 (Arabidopsis thaliana) Explore Q9STY6 Go to UniProtKB: Q9STY6 | |||||
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| UniProt Group | Q9STY6 | ||||
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Entity ID: 78 | |||||
|---|---|---|---|---|---|
| Molecule | Chains | Sequence Length | Organism | Details | Image |
| Small ribosomal subunit protein eS10z | AC [auth AI] | 177 | Arabidopsis thaliana | Mutation(s): 0 |  |
UniProt | |||||
Find proteins for Q9SW09 (Arabidopsis thaliana) Explore Q9SW09 Go to UniProtKB: Q9SW09 | |||||
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| UniProt Group | Q9SW09 | ||||
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Entity ID: 79 | |||||
|---|---|---|---|---|---|
| Molecule | Chains | Sequence Length | Organism | Details | Image |
| Nascent polypeptide (poly-A) | BC [auth L3] | 23 | Arabidopsis thaliana | Mutation(s): 0 |  |
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Entity ID: 1 | |||||
|---|---|---|---|---|---|
| Molecule | Chains | Length | Organism | Image | |
| Ribosomal RNA 5.8S | A [auth 3] | 164 | Arabidopsis thaliana |  | |
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Entity ID: 2 | |||||
|---|---|---|---|---|---|
| Molecule | Chains | Length | Organism | Image | |
| Ribosomal RNA 25S | B [auth A] | 3,385 | Arabidopsis thaliana |  | |
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Entity ID: 3 | |||||
|---|---|---|---|---|---|
| Molecule | Chains | Length | Organism | Image | |
| Transfer RNA Phe (GAA) | C [auth i2], YB [auth W2] | 76 | Arabidopsis thaliana |  | |
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Entity ID: 4 | |||||
|---|---|---|---|---|---|
| Molecule | Chains | Length | Organism | Image | |
| Ribosomal RNA 5S | D [auth C3] | 121 | Arabidopsis thaliana |  | |
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Entity ID: 75 | |||||
|---|---|---|---|---|---|
| Molecule | Chains | Length | Organism | Image | |
| Ribosomal RNA 18S | WB [auth h1] | 1,805 | Arabidopsis thaliana |  | |
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Entity ID: 76 | |||||
|---|---|---|---|---|---|
| Molecule | Chains | Length | Organism | Image | |
| Messenger RNA (poly-U) | XB [auth B1] | 12 | Arabidopsis thaliana |  | |
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| |||||
Small Molecules
| Ligands 6 Unique | |||||
|---|---|---|---|---|---|
| ID | Chains | Name / Formula / InChI Key | 2D Diagram | 3D Interactions | |
| EPE Query on EPE | OC [auth A] | 4-(2-HYDROXYETHYL)-1-PIPERAZINE ETHANESULFONIC ACID C8 H18 N2 O4 S JKMHFZQWWAIEOD-UHFFFAOYSA-N |  | ||
| TER (Subject of Investigation/LOI) Query on TER | LC [auth A] | N-(3-AMINO-PROPYL)-N-(5-AMINOPROPYL)-1,4-DIAMINOBUTANE C10 H26 N4 DODDBCGMRAFLEB-UHFFFAOYSA-N |  | ||
| SPD Query on SPD | MC [auth A], NC [auth A], PC [auth A], QC [auth A] | SPERMIDINE C7 H19 N3 ATHGHQPFGPMSJY-UHFFFAOYSA-N |  | ||
| ZN Query on ZN | LP [auth Ma] LQ [auth Ga] OQ [auth BE] QP [auth BD] QQ [auth AY] | ZINC ION Zn PTFCDOFLOPIGGS-UHFFFAOYSA-N |  | ||
| K Query on K | AL [auth A] AM [auth A] AN [auth A] AO [auth A] AP [auth A] | POTASSIUM ION K NPYPAHLBTDXSSS-UHFFFAOYSA-N |  | ||
| MG Query on MG | AD [auth A] AE [auth A] AF [auth A] AG [auth A] AH [auth A] | MAGNESIUM ION Mg JLVVSXFLKOJNIY-UHFFFAOYSA-N |  | ||
| Modified Residues 2 Unique | |||||
|---|---|---|---|---|---|
| ID | Chains | Type | Formula | 2D Diagram | Parent |
| HIC Query on HIC | V [auth BS] | L-PEPTIDE LINKING | C7 H11 N3 O2 |  | HIS |
| MLY Query on MLY | CB [auth Ga] | L-PEPTIDE LINKING | C8 H18 N2 O2 |  | LYS |
Experimental Data & Validation
Experimental Data
- Method: ELECTRON MICROSCOPY
- Resolution: 2.25 Å
- Aggregation State: PARTICLE
- Reconstruction Method: SINGLE PARTICLE
| Task | Software Package | Version |
|---|---|---|
| RECONSTRUCTION | cryoSPARC |
Entry History & Funding Information
Deposition Data
- Released Date: 2026-02-04 Deposition Author(s): Faille, A., Warren, A.J.
| Funding Organization | Location | Grant Number |
|---|---|---|
| Gatsby Charitable Foundation | United Kingdom | GAT3395/PR3 |
| Biotechnology and Biological Sciences Research Council (BBSRC) | United Kingdom | BB/N013158/1 |
| European Research Council (ERC) | European Union | 323052 |
Revision History (Full details and data files)
- Version 1.0: 2026-02-04
Type: Initial release
